View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8497_low_6 (Length: 286)
Name: NF8497_low_6
Description: NF8497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8497_low_6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 1488084 - 1487878
Alignment:
| Q |
1 |
aatccattgtttatgtttgtttcggtaccattgacagttttcaatgaacttcaaattgcaatggctcttgaacgaggttgctctcgaaaatttcttatgc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| |
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| T |
1488084 |
aatccattgtttatgtttgtttcggtaccat-gaaagttttcaatgaacttcaaattgcaatggctcttgaacgagattgctcttggaaatttcttatgc |
1487986 |
T |
|
| Q |
101 |
ttgtaacttcacccatttcaactcaataatgttaaaacaactttcctagaataattgctggtttaaaaaactcagatctgaaatttgttgatagcacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
1487985 |
ttgtaacttcacccatttcaactcaataatgttaaaacaactttcccataataattgctggtttaaaaaacttagatctgaaatttgttgatagcccaaa |
1487886 |
T |
|
| Q |
201 |
tttgttgg |
208 |
Q |
| |
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|||||||| |
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|
| T |
1487885 |
tttgttgg |
1487878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 50306120 - 50305944
Alignment:
| Q |
32 |
tgacagttttcaatgaacttcaaattgcaatggctcttgaacgaggttgctctcgaaaatttcttatgcttgtaacttcacccatttcaactcaataatg |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50306120 |
tgacagttttcaatgaacttcaaattgcaatggctcttgaacgaggttgctcttggaaatttcttatgcttgtaacttcacccatttcaacgcaataatg |
50306021 |
T |
|
| Q |
132 |
ttaaaacaactttcctagaataattgctggtttaaaaaactcagatctgaaatttgttgatagcacaaatttgttgg |
208 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
50306020 |
ttaaaacaactttcccagaataattgctagtttaaaaaactcagatctgaaatttgttgatagcccaaatttgttgg |
50305944 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 50305915 - 50305880
Alignment:
| Q |
233 |
tgttgatgatgaatgtggttgtttttcaaccgtttc |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
50305915 |
tgttgatgatgaatgtggttgtttttcaaccgtttc |
50305880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 26021508 - 26021332
Alignment:
| Q |
32 |
tgacagttttcaatgaacttcaaattgcaatggctcttgaacgaggttgctctcgaaaatttcttatgcttgtaacttcacccatttcaactcaataatg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
26021508 |
tgacagttttcaatgaacttcaaattgcaatggctcttgaacgaggttgctcttggaaatttcttatgcttgtaacttcacccatttcaacgcaataatg |
26021409 |
T |
|
| Q |
132 |
ttaaaacaactttcctagaataattgctggtttaaaaaactcagatctgaaatttgttgatagcacaaatttgttgg |
208 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26021408 |
ttaaaacaactttcccagaataattgctagtttaaaaaactcagatctgaaatttgttgatagcccaaatttgttgg |
26021332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 26021303 - 26021268
Alignment:
| Q |
233 |
tgttgatgatgaatgtggttgtttttcaaccgtttc |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
26021303 |
tgttgatgatgaatgtggttgtttttcaaccgtttc |
26021268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 3788886 - 3789062
Alignment:
| Q |
32 |
tgacagttttcaatgaacttcaaattgcaatggctcttgaacgaggttgctctcgaaaatttcttatgcttgtaacttcacccatttcaactcaataatg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3788886 |
tgacagttttcaatgaacttcaaattgcaatggctcttgaacgaggttgctcttggaaatttcttatgcttgtaacttcacccatttcaacgcaataatg |
3788985 |
T |
|
| Q |
132 |
ttaaaacaactttcctagaataattgctggtttaaaaaactcagatctgaaatttgttgatagcacaaatttgttgg |
208 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
3788986 |
ttaaaacaactttcccagaataattgctagtttaaaaaactcagatctgaaatttgttgatagcccaaatttgttgg |
3789062 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 51050928 - 51050974
Alignment:
| Q |
84 |
tcgaaaatttcttatgcttgtaacttcacccatttcaactcaataat |
130 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
51050928 |
tcgaaaattccttatgcttgtaacttcacctatttcaactcaataat |
51050974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 3789091 - 3789126
Alignment:
| Q |
233 |
tgttgatgatgaatgtggttgtttttcaaccgtttc |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789091 |
tgttgatgatgaatgtggttgtttttcaaccgtttc |
3789126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 23593557 - 23593511
Alignment:
| Q |
84 |
tcgaaaatttcttatgcttgtaacttcacccatttcaactcaataat |
130 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
23593557 |
tcgaaaattccttatgcttgtaacttcacctatttcaactcaataat |
23593511 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 28123825 - 28123782
Alignment:
| Q |
87 |
aaaatttcttatgcttgtaacttcacccatttcaactcaataat |
130 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| ||||||||||| |
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| T |
28123825 |
aaaattccttatgcttgtaacttcacctatttaaactcaataat |
28123782 |
T |
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