View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8497_low_7 (Length: 284)

Name: NF8497_low_7
Description: NF8497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8497_low_7
NF8497_low_7
[»] chr3 (7 HSPs)
chr3 (17-70)||(48198705-48198758)
chr3 (63-121)||(9450693-9450751)
chr3 (63-121)||(17724542-17724600)
chr3 (63-121)||(19025771-19025829)
chr3 (63-121)||(28838481-28838539)
chr3 (63-121)||(28830516-28830574)
chr3 (63-121)||(26640709-26640767)
[»] chr7 (4 HSPs)
chr7 (66-121)||(47465773-47465828)
chr7 (63-121)||(47228522-47228580)
chr7 (63-121)||(19545504-19545562)
chr7 (63-126)||(19538853-19538916)
[»] chr1 (3 HSPs)
chr1 (64-121)||(1466766-1466823)
chr1 (73-121)||(35923229-35923277)
chr1 (73-121)||(5050609-5050657)
[»] chr5 (6 HSPs)
chr5 (73-121)||(9369958-9370006)
chr5 (73-121)||(9211479-9211527)
chr5 (73-121)||(19242484-19242532)
chr5 (73-120)||(12560131-12560178)
chr5 (63-121)||(35181992-35182050)
chr5 (73-121)||(38783815-38783863)
[»] chr8 (2 HSPs)
chr8 (73-121)||(9937275-9937323)
chr8 (73-121)||(9939647-9939695)
[»] chr4 (1 HSPs)
chr4 (73-121)||(44089676-44089724)


Alignment Details
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 48198758 - 48198705
Alignment:
Q  17 gattgtttcgatgatctccagtggaattgatttcgtcttcaaaattggtcacct 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48198758 gattgtttcgatgatctccagtggaattgatttcgtcttcaaaattgttcacct 48198705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 9450751 - 9450693
Alignment:
Q  63 ggtcacctttctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  9450751 ggtcaccttcctaggccatgggccttcttgatcacccattgaccccatccaggtaagta 9450693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 17724600 - 17724542
Alignment:
Q  63 ggtcacctttctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  17724600 ggtcaccttcctaggccatgggccttcttgatcacccattgaccccatccaggtaagta 17724542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 19025829 - 19025771
Alignment:
Q  63 ggtcacctttctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  19025829 ggtcaccttcctaggccatgggccttcttgatcacccattgaccccatccaggtaagta 19025771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 28838481 - 28838539
Alignment:
Q  63 ggtcacctttctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  28838481 ggtcaccttcctaggccatgggccttcttgatcacccattgaccccatccaggtaagta 28838539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 28830516 - 28830574
Alignment:
Q  63 ggtcacctttctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||||||||||||||| ||||  ||| || ||||||||||||||||||||||||    
T  28830516 ggtcacctttctaggccatggaccttcttgatcatccattgaccccatccaggtaagta 28830574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 26640767 - 26640709
Alignment:
Q  63 ggtcacctttctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    |||||| | |||||||||||||||||  ||| ||||||| |||||||||||||||||||    
T  26640767 ggtcacttgtctaggccatgggccttcttgatcacccatcgaccccatccaggtaagta 26640709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 47465773 - 47465828
Alignment:
Q  66 cacctttctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  47465773 cacctttctaggccatgggccttcatgatcacccattgaccccatccaggtaagta 47465828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 47228580 - 47228522
Alignment:
Q  63 ggtcacctttctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||    
T  47228580 ggtcacctttctaggccataggccttcatgatcacccattgaccccatccaggtaagta 47228522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 19545504 - 19545562
Alignment:
Q  63 ggtcacctttctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    |||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||    
T  19545504 ggtcacttttctaggccataggccttcatgatcacccattgaccccatccaggtaagta 19545562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 19538853 - 19538916
Alignment:
Q  63 ggtcacctttctaggccatgggcctttatgaacacccattgaccccatccaggtaagtagtttg 126  Q
    |||||| || ||||||||||||||||  ||| ||||||||||||||||||||||||||| ||||    
T  19538853 ggtcactttcctaggccatgggccttcgtgatcacccattgaccccatccaggtaagtaatttg 19538916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 1466823 - 1466766
Alignment:
Q  64 gtcacctttctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  1466823 gtcacctttctaggccatgggccttcttgatcacccattgaccccatccaggtaagta 1466766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 35923277 - 35923229
Alignment:
Q  73 ctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  35923277 ctaggccatgggccttcatgatcacccattgaccccatccaggtaagta 35923229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 5050609 - 5050657
Alignment:
Q  73 ctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||||| ||||| ||| || ||||||||||||||||||||||||    
T  5050609 ctaggccatggacctttttgatcatccattgaccccatccaggtaagta 5050657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 9370006 - 9369958
Alignment:
Q  73 ctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  9370006 ctaggccatgggcctttttgatcacccattgaccccatccaggtaagta 9369958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 9211479 - 9211527
Alignment:
Q  73 ctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  9211479 ctaggccatgggccttcctgatcacccattgaccccatccaggtaagta 9211527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 19242484 - 19242532
Alignment:
Q  73 ctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  19242484 ctaggccatgggccttcttgatcacccattgaccccatccaggtaagta 19242532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 12560178 - 12560131
Alignment:
Q  73 ctaggccatgggcctttatgaacacccattgaccccatccaggtaagt 120  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  12560178 ctaggccatgggccttcttgatcacccattgaccccatccaggtaagt 12560131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 35182050 - 35181992
Alignment:
Q  63 ggtcacctttctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    |||||||  |||||||||||  |||| |||| || ||||||||||||||||||||||||    
T  35182050 ggtcaccaatctaggccatgaaccttaatgatcatccattgaccccatccaggtaagta 35181992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 38783863 - 38783815
Alignment:
Q  73 ctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||||| ||||  ||| || ||||||||||||||||||||||||    
T  38783863 ctaggccatggaccttcttgatcatccattgaccccatccaggtaagta 38783815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 9937323 - 9937275
Alignment:
Q  73 ctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||||| |||| |||| || ||||||||||||||||||||||||    
T  9937323 ctaggccatggaccttcatgatcatccattgaccccatccaggtaagta 9937275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 9939695 - 9939647
Alignment:
Q  73 ctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    ||||||||| | |||| |||| || ||||||||||||||||||||||||    
T  9939695 ctaggccatagaccttcatgatcatccattgaccccatccaggtaagta 9939647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 44089724 - 44089676
Alignment:
Q  73 ctaggccatgggcctttatgaacacccattgaccccatccaggtaagta 121  Q
    |||||||||| ||||| |||| ||| ||| |||||||||||||||||||    
T  44089724 ctaggccatgagccttcatgatcactcatagaccccatccaggtaagta 44089676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University