View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8497_low_8 (Length: 271)
Name: NF8497_low_8
Description: NF8497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8497_low_8 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 31045359 - 31045102
Alignment:
| Q |
1 |
tagagttaaattaaatgtatgttgtgacaattggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggctatatgaacatg |
100 |
Q |
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| T |
31045359 |
tagagttaaattaaatgtatgttgtgacaattggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggttatatgaacatg |
31045260 |
T |
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| Q |
101 |
tttgcatgagtttaaattttgaatcttaatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgccgcaaacttcgtttggtgagg |
200 |
Q |
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| T |
31045259 |
tttgcatgagtttaaattttgaatcttaatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgccgcaagcttcgtttggtgagg |
31045160 |
T |
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| Q |
201 |
ctttaggagaagagcaacttttcctttacatacactgctgcataccttgcatgtgatg |
258 |
Q |
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| T |
31045159 |
ctttaggagaatagcaacttttcctttacatacactgctgaataccttgcatgagatg |
31045102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 172013 - 172245
Alignment:
| Q |
1 |
tagagttaaattaaatgtatgt-tgtgacaattggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggctatatgaacat |
99 |
Q |
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||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
172013 |
tagagtttaattaaatgaatgtgtgtgacaattggatacggatgaaatatgtactaataattcaatggaatttcagagaaagagaggattatatgaacat |
172112 |
T |
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| Q |
100 |
gtttgcatgagtttaaattttgaatcttaatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgcc------gcaaacttcgttt |
193 |
Q |
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||||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||| |||||||| |
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| T |
172113 |
gtttgcatgagattgaattttgaa-cttaatttacatatacaaaatgtttttaatgtgaagatgaagacctgttatatatcttctaatcaagcttcgttt |
172211 |
T |
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| Q |
194 |
ggtgaggctttaggagaagagcaac-ttttcctt |
226 |
Q |
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|||| ||||||| |||||||||||| |||||||| |
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| T |
172212 |
ggtgtggctttaagagaagagcaacattttcctt |
172245 |
T |
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