View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8498_high_11 (Length: 337)
Name: NF8498_high_11
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 51857811 - 51858133
Alignment:
| Q |
20 |
tgtggctgtttgtttacctccatatttacatcgatagcaatattt------------------atgattttcatggtgtattcaatgttatgcaaaaaat |
101 |
Q |
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| T |
51857811 |
tgtggctgtttgtttacctccatatttacatcgatagcaatattttggtgctgttgaaatcgtatgattttcatggtgtattcaatgttatgcaaaaaat |
51857910 |
T |
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| Q |
102 |
atctcgtggattcctcataaatataaattatcnnnnnnn-gaaaagaatgggcagagtagcagcaggaacagatgcggagacttgaagaaagagtgtgtg |
200 |
Q |
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| T |
51857911 |
atctcgtggattcttcataaatataaattatcaaaaaaaagaaaagaatgggcagagtagcagcaggaacagatgcggagacttgaagaaagtgtgtgtg |
51858010 |
T |
|
| Q |
201 |
atgatagatgatgacacggttgactggctaaatcttactcgagagttatggttagttactatatcc-nnnnnnntcttcgattccgtagtgtctgtgctt |
299 |
Q |
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| T |
51858011 |
atgatagatgatgacacggttgattggctaaatcttcctcgagacttatggttagttattatatccaaaaaaaaatttcgattccgtagtgcctgtgctt |
51858110 |
T |
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| Q |
300 |
tatggcgctctattctttcccct |
322 |
Q |
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| T |
51858111 |
tatggcgctctattctttcccct |
51858133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 64 - 266
Target Start/End: Complemental strand, 34865684 - 34865479
Alignment:
| Q |
64 |
tatgattttcatggtgtattcaatgttatgcaaaaaatatctcgtggattcctcata----aatataaattatcnnnnnnngaaaagaatgggcagagta |
159 |
Q |
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| T |
34865684 |
tatgattttcatggtgtattcaatgttacgcaaaaa-tatctcatggattccttatatataaatataaattat-tataaaagaaaagaacgggcagagtg |
34865587 |
T |
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| Q |
160 |
gcagcaggaacagatg-cggagacttgaagaaagagtgtgtgatgatagatgatgacacggttgactggctaaatcttactcgagagttatggttagtta |
258 |
Q |
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| T |
34865586 |
gcagcagggactggtgacggagacttgaagaaaaagtgtgtgatgatggatgatgacgcagttgactggctaaatcttcctcgagaattatggttagtta |
34865487 |
T |
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| Q |
259 |
ctatatcc |
266 |
Q |
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||||||| |
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| T |
34865486 |
ttatatcc |
34865479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 34865455 - 34865407
Alignment:
| Q |
274 |
tcttcgattccgtagtgtctgtgctttatggcgctctattctttcccct |
322 |
Q |
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| T |
34865455 |
tcttcgattccgtagtgtctgtgctttattgcgctctattcttccccct |
34865407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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