View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8498_high_13 (Length: 320)
Name: NF8498_high_13
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 38619204 - 38618891
Alignment:
| Q |
1 |
gggaaataagacattaatcaactgttgcaagtaattaatggaacgtaagtgttgcttnnnnnnncaaagtttagctagttaatttgacatttcagccatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38619204 |
gggaaataagacattaatcaactgttgcaagtaattaatggaacgtaagtgttgcttaaaaaaacaaagtttagctagttaatttgacatttcagccatt |
38619105 |
T |
|
| Q |
101 |
attataaatttattagtgc---------aattaaaatttattgataaaacgtcgttttcttactttcctcccccc-accttcaatacacggtacatagat |
190 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38619104 |
attataaatttattagtgcttttagtgcaattaaaatttattgataaaacgtcgttttcttactttcctcccccccaccttcaatacacggtacatagat |
38619005 |
T |
|
| Q |
191 |
ttacgtacgtaggtccacgaatgtaccgcatgaatgacagacagacacaagtcgagagtgccatcttttgtgcagccttcaattacatgaattttttatg |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38619004 |
ttacgtacgtaggtccacgaatgtaccgcatgaatgacagacagacacaagtcgagagtgccatcttttgtgcagccttcaattacatgaattttttatg |
38618905 |
T |
|
| Q |
291 |
ctatttcttgtact |
304 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38618904 |
ctatttcttgtact |
38618891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University