View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8498_high_17 (Length: 264)
Name: NF8498_high_17
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 37924436 - 37924185
Alignment:
| Q |
1 |
gacaccaataataattaggaaaaaacaaatcaaataacaagtatctatgacatgtcggtgttggacacaacaccgaacatactccggacaccggatacga |
100 |
Q |
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| T |
37924436 |
gacaccaataataattaggaaaaaacaaatcaaataacaagtatctatgacatgtcggtgttggacacaacaccgaacatactccggacacaggatacga |
37924337 |
T |
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| Q |
101 |
ctacaaagtactagatctttagacacactttcaactaattgagcaaaagaaagagtacttacgtattgttctttcccgtattgctctttccttttgagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37924336 |
ctacaaagtactagatctttagacacactttcaactaattgagcaaaagaaagagtacttacgtattgttctttcccgtattgctctttccttttgagtc |
37924237 |
T |
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| Q |
201 |
ttttttacaccagtggtctttctctttctcttcactgttccatcactttcat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37924236 |
ttttttacaccagtggtctttctctttctcttcactgttccatcactttcat |
37924185 |
T |
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