View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8498_high_2 (Length: 620)
Name: NF8498_high_2
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 1543780 - 1544385
Alignment:
| Q |
1 |
agtaggcctccagtgcagaattctggtccacctccaaacaatgcttaccctcccaacaatggtggcggataccctttcaacaaccaagctggatatgccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1543780 |
agtaggcctccagtgcagaattctggtccacctccaaacaatgcttaccctcccaacaatggtggcggataccctttcaacaaccaagctggatatgccc |
1543879 |
T |
|
| Q |
101 |
ctccaaatcaaggtggatacgctcctccaaatgcaggtggcggataccctccccacgacatgagtggacctcctcctcctcccaacagtggatatcgtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1543880 |
ctccaaatcaaggtggatacgctcctccaaatgcaggtggtggataccctccccacaacatgagtggacctcctcctcctcccaacagtggatatcgtgc |
1543979 |
T |
|
| Q |
201 |
tcctcaaaataactacccggggcaacaaaaccacatggcagggatgtctccaaatgctggttggtcaaataatcagtagactctcgtcctgacctctgag |
300 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1543980 |
tcctcaaaataactactcggggcaacaaaaccacatggcagggatgtctccaaatgctggttggtcaaataatcagtagactctcgtcctgacctccgag |
1544079 |
T |
|
| Q |
301 |
taatgagattttatagatcttaggtctagtttcccttcttcataatgaatttgtgtttcgggtattgaagtttacaatttttgaagttcattattttgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1544080 |
taatgagattttatagatcttaggtctagtttcccttcttcataatgaatttgtgtttcgggtattgaagtttacaatttttgaagttcattattttgat |
1544179 |
T |
|
| Q |
401 |
ggtttattcgaaagttaagtgtcagtttattaaaacaaaattgtcggatacacttcattaagtatcgtagtttattagtaaaaaatatatttatcttaca |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
1544180 |
ggtttattcgaaagttaagtgtcagtttattaaaacaaaattgtctgatacacttcattaagtatcgtagtttattagtaaaaaatatatttatctgaca |
1544279 |
T |
|
| Q |
501 |
cacttaagccgaatagtcgtgagaaattcatgatc-----atgatctttgtgatttgtcttactgaatgtgattcaacaaaatatattaaagactgaagc |
595 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1544280 |
cacttaagccgaatagtcgtgagaaattcatgatcatgatatgatctttgtgatttgtcttactgaatgtgattcaacaaaatatattaatgactgaagc |
1544379 |
T |
|
| Q |
596 |
acatag |
601 |
Q |
| |
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|||||| |
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| T |
1544380 |
acatag |
1544385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 5e-79; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 299 - 565
Target Start/End: Original strand, 32425879 - 32426149
Alignment:
| Q |
299 |
agtaatgagattttatag--atcttaggtctagtttcccttcttcataatgaatttgtgtttcgggtattgaagtttacaatttttgaagttcattattt |
396 |
Q |
| |
|
|||||||||||||||| | ||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| ||| ||| ||||||||||| ||| |
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| T |
32425879 |
agtaatgagattttattgtgatcttgtgtctagtttcccttcttcctaatgaatttgcgtttcgggtattgaagttcaca-tttgtgaagttcattgttt |
32425977 |
T |
|
| Q |
397 |
tgatggtttattcgaaagttaagtgtca--gtttattaaaacaaaattgtcggatacacttcattaagtatcgtagtttattagtaaaa-aatatattta |
493 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
32425978 |
tgatggtttattcgaaagttaagtgtcatagtttattaaaacagaattgtctgatatacttcattaagtatcatagtttattagtaaaaaaatatattta |
32426077 |
T |
|
| Q |
494 |
tcttacacacttaagccgaatagtcgtgagaaattcatgatcatgatctttgtgatttgtcttactgaatgt |
565 |
Q |
| |
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||| | |||||| || |||||||||||||||||| || ||||| |||||||||||||||||||| |||||| |
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|
| T |
32426078 |
tctgatacacttcagttgaatagtcgtgagaaatttataatcatcatctttgtgatttgtcttacggaatgt |
32426149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 91 - 285
Target Start/End: Original strand, 32421641 - 32421859
Alignment:
| Q |
91 |
ggatatgcccctccaaatcaaggtggatacgctcctccaaatgcaggtggcggataccctccccacgacatgagtggacctcctc--------------- |
175 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||| ||||| |||| |
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| T |
32421641 |
ggatacgcccctccaaatcaaggtggatatgctcctccaaatgcaggtggtggataccctccccccaacatgagcggaccccctcctcctaacatgagca |
32421740 |
T |
|
| Q |
176 |
------ctcctcccaacagtggatatcgtgctcctcaaaataactacccggggcaacaaaacc---acatggcagggatgtctccaaatgctggttggtc |
266 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||| ||||| |
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| T |
32421741 |
gacctcctcctcccaacagtggatacggtgctcctcaaaataactacctggggcaacaaaaccagaacattgcagggatgcctccaaatgctggatggtc |
32421840 |
T |
|
| Q |
267 |
aaataatcagtagactctc |
285 |
Q |
| |
|
||||||||||||||||||| |
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| T |
32421841 |
aaataatcagtagactctc |
32421859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 32421524 - 32421610
Alignment:
| Q |
46 |
taccctcccaacaatggtggcggataccctttcaacaaccaagctggatatgcccctccaaatcaaggtggatacgctcctccaaat |
132 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||| | ||||||||| |
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| T |
32421524 |
taccctcccaacaatgctggcggataccctcctaacaatcaagctggatactcccctccaaatcaatctggatactcccctccaaat |
32421610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32421449 - 32421490
Alignment:
| Q |
1 |
agtaggcctccagtgcagaattctggtccacctccaaacaat |
42 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
32421449 |
agtaggcctccagtgcagaattctggtccacctcccaacaat |
32421490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 32421611 - 32421658
Alignment:
| Q |
85 |
caagctggatatgcccctccaaatcaaggtggatacgctcctccaaat |
132 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||| ||||||||| |
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| T |
32421611 |
caagctggatacgcccctccaaatcaaggcggatacgcccctccaaat |
32421658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 32425725 - 32425770
Alignment:
| Q |
247 |
tctccaaatgctggttggtcaaataatcagtagactctcgtcctga |
292 |
Q |
| |
|
||||||||||| || ||| ||||||||||||||||||||||||||| |
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|
| T |
32425725 |
tctccaaatgcaggatgggcaaataatcagtagactctcgtcctga |
32425770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 32425686 - 32425738
Alignment:
| Q |
85 |
caagctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcagg |
137 |
Q |
| |
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||||||||| | ||| || |||||||||| ||||||||| ||||||||||||| |
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| T |
32425686 |
caagctggacacgcctctgcaaatcaaggcggatacgcttctccaaatgcagg |
32425738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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