View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8498_high_4 (Length: 482)
Name: NF8498_high_4
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 5 - 464
Target Start/End: Original strand, 2179435 - 2179896
Alignment:
| Q |
5 |
agtttggtgttcaacttcagatgcgctcagatgttgtagcatcgcaacaacatttagctagttttccaacttgagctgctacctgctattacactgtcaa |
104 |
Q |
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| T |
2179435 |
agttttgtgttcaacttcagatgcgctcagatgttgtagcatcgcaacaacatttagctagttttccaacttgagctgctacctgctattacactgtcaa |
2179534 |
T |
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| Q |
105 |
aacacaacata-attcattcataaaaatactcttaagtcctagaagtgaatattaaaacctaagtaactaaattactctaatttgaggaggatgagacaa |
203 |
Q |
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| T |
2179535 |
aacacaacatatattcattcataaaaatactcttaagtcctagaagtgaatattaaaacctaagtaactaaattactctaatttgaggaggatgagacaa |
2179634 |
T |
|
| Q |
204 |
tgcatctactcaaaatatctctcnnnnnnnn-cttcagaaaaatagtactaaatggcagtaacacaattctctcttacatttttattgtgcaaggtagac |
302 |
Q |
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| T |
2179635 |
tgcatctactcaaaatatctctctttttttttcttcagaaaaatagtactaaatggcagtaacacaattctctcttacatttttattgtgcaaggtaaac |
2179734 |
T |
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| Q |
303 |
tgacaaatcccatgaaaggaatattagagaaagtgttcacagttgttgaagtggctatggcggctaaacaattgaagctcctcgcaggtcgcagcatcga |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2179735 |
tgacaaatcccatgaaaggaatattagagaaagtgttcacagttgttgaagtggctatggcggctaagcaattgaagctcctcgcaggtcgcagcatcga |
2179834 |
T |
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| Q |
403 |
aaccagatggcatgccaacattattttatcatcagttccatgcataatatgacaggatgtta |
464 |
Q |
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| T |
2179835 |
aaccagatggcatgccaacattattttatcatcagttccatgcataatatgacgggatgtta |
2179896 |
T |
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