View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8498_high_9 (Length: 373)
Name: NF8498_high_9
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 357
Target Start/End: Original strand, 49876062 - 49876402
Alignment:
| Q |
17 |
cagaccaaatattttacacgttttcaaaatgttgaaagttttgacctttgaatctattgtgagcatgatgcccaaggcaaacatgaactaaatactagta |
116 |
Q |
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| T |
49876062 |
cagaccatgtattttacacgttttcaaaatgttgaaagttttgacctt-gaatctattgtaagcatgatgcccaaggcaaacatgaactaaatactagta |
49876160 |
T |
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| Q |
117 |
atacagtttggagcacagaaggaaagttcaaaatttgaacaaatgaaaatctctactaatctaataatgtttgggacttccgtcatcattcatatccaca |
216 |
Q |
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| T |
49876161 |
atacagtttggagcacagaaggaaagttcaaaatttgaacaaatgaaaatctctactaatctaataatgtttgggacttccgtcatcattcatatccaca |
49876260 |
T |
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| Q |
217 |
tccatgtatgttgatttatacaaactaaatacataatccaacaacttgccaacaaggaagttataagttatcattaaccaacacatttccttacgtggaa |
316 |
Q |
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| T |
49876261 |
tccatgtatgttgatttatacaaactaaatacataatccaacaacttgccaacaaggaagttataagttatcattaaccaacacatttccttacgtggaa |
49876360 |
T |
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| Q |
317 |
actaatattctt-caccatatatagtttattatgttagttat |
357 |
Q |
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| T |
49876361 |
actaatattcttccaccatatatagtttattatgttagttat |
49876402 |
T |
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