View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8498_low_1 (Length: 638)
Name: NF8498_low_1
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 12 - 621
Target Start/End: Complemental strand, 41095501 - 41094892
Alignment:
| Q |
12 |
tttggtggtggaggaggcatcatatgagtcgggggattctgtttaagcttcaaaatcatttggcgcattctagaaagatcggtaggtttcccaggctttg |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41095501 |
tttggtgggggaggaggcatcatatgagtcgggggattctgtttaagcttcaaaatcatttggcgcattctagaaagatcggtaggtttcccaggctttg |
41095402 |
T |
|
| Q |
112 |
gaccttgaataacatgaaccgaaggtttattgtcggcttcttttttccctctcctcttctcaatattaggaacctcgcgaggaatgatctctgctattgc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41095401 |
gaccttgaataacatgaaccgaaggtttattgtcggcttcttttttccctctcctcttctcaatattaggaacctcgcgaggaatgatctctgctattgc |
41095302 |
T |
|
| Q |
212 |
tttccagtaatgtttgtcagcttctttgtgaaatttctcttggttggccaagtatatctagacagacacatgtataaataatcattcccttaatttttca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
41095301 |
tttccagtaatgtttgtcagcttctttgtgaaatttctcttggttggccaagtatatctagacagacacatgtataaataatcattctctatatttttca |
41095202 |
T |
|
| Q |
312 |
tacacattatgaagaagtatggcgtggtgaggaaatggaacaggcgaaaaagacatataattgcttaatagtttactattataccttttctttttctctg |
411 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41095201 |
tacacattataaagaagtatggcatggtgaggaaatggaacaggcgaaaaagacatataattgcttaatagtttactattataccttttctttttctctg |
41095102 |
T |
|
| Q |
412 |
ttggtctgtttgtttgtctcacaattgagttttcttttctcatagaaagcttccttaaaatcttcagcttcctttatgatctgatttctcatttcctttt |
511 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41095101 |
ttggtttgtttgtttgtctcacaattgagttttcttttctcatagaaagcttccttaaaatcttcagcttcctttatgatctgatttctcatttcctttt |
41095002 |
T |
|
| Q |
512 |
ctctcttctccttttcctcaaggtgaatggcatttttcctgcataggttgaagccataaaaattgtactatcatacaggcaaacaaaagcatgacagtat |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41095001 |
ctctcttctccttttcctcaaggtgaatggcatttttcctgcataggttgaagccataaaaattgtactatcatacaggcaaacaaaagcatgacagtat |
41094902 |
T |
|
| Q |
612 |
tactttcttc |
621 |
Q |
| |
|
|||||||||| |
|
|
| T |
41094901 |
tactttcttc |
41094892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 153 - 267
Target Start/End: Original strand, 35590261 - 35590375
Alignment:
| Q |
153 |
tttttccctctcctcttctcaatattaggaacctcgcgaggaatgatctctgctattgctttccagtaatgtttgtcagcttctttgtgaaatttctctt |
252 |
Q |
| |
|
||||| ||||| |||||||||| || | |||||| || ||||| ||||| | |||||||||||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
35590261 |
tttttgcctcttttcttctcaatgttggcaacctcacggggaattatctccccaattgctttccagtaatttttgtcagcctctttgtgaaaattctctt |
35590360 |
T |
|
| Q |
253 |
ggttggccaagtata |
267 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
35590361 |
gattggccaagtata |
35590375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 3523347 - 3523450
Alignment:
| Q |
150 |
tcttttttccctctcctcttctcaatattaggaacctcgcgaggaatgatctctgctattgctttccagtaatgtttgtcagcttctttgtgaaatttct |
249 |
Q |
| |
|
|||||||| ||||||||||| ||||| || | |||||| |||||||||| |||||| |||| ||||| ||| |||||| || ||||||||||| |||| |
|
|
| T |
3523347 |
tcttttttgcctctcctcttttcaatgttggcaacctcacgaggaatgagctctgcaattgtcttccaataagctttgtctgcctctttgtgaaacttct |
3523446 |
T |
|
| Q |
250 |
cttg |
253 |
Q |
| |
|
|||| |
|
|
| T |
3523447 |
cttg |
3523450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University