View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8498_low_12 (Length: 366)
Name: NF8498_low_12
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 9364646 - 9364298
Alignment:
| Q |
1 |
aagcttaaacatggataatctagtacacatttgggctaagaatgagtataaaccaaattgctctcttgttcacaaacatctgcaagaagattggctttat |
100 |
Q |
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| T |
9364646 |
aagcttaaacatggataatctagtacacatttgggctaagaatgagtataaaccaaattgctctcttgttcataaatatctgcaagaagattggctttat |
9364547 |
T |
|
| Q |
101 |
tgtgctgaagatggtgttgcaataactcgacttgctttgcagtgcatagaattttttccagcaaatcgtccttcaatgagggatgtgttgcaaaatttag |
200 |
Q |
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| T |
9364546 |
tgtgctgaagatggtgttgcaataactcgacttgctttgcagtgcatagaattttttccagcaaatcgtccttcaatgaaggatgtgttgcaaaatttag |
9364447 |
T |
|
| Q |
201 |
aaaatatttcggtattgcaacatttgtttgatgctagatcaactaaaagggagaagaagttgatttcatcatgatgcaaatttaaattacataatcaaca |
300 |
Q |
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| T |
9364446 |
aaaatatttcggtattgcaacatttgtttgatgctagatcaactaaaagggcgaagaagttgatttcatcatgatgcaaatttaaattacataatcaaca |
9364347 |
T |
|
| Q |
301 |
tttgtttctctagctaggcatcaaacactccataatcaaccgtgccttt |
349 |
Q |
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| T |
9364346 |
tttgtttctctagctaggcatcaaacactccataatcaaccgtgccttt |
9364298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 9400132 - 9399842
Alignment:
| Q |
1 |
aagcttaaacatggataatctagtacacatttgggctaagaatgagtataaaccaaattgctctcttgttcacaaacatctgcaagaagattggctttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9400132 |
aagcttaaacatggataatctagtacacatttgggctaagaatgtgtataaaccaaattgctctcttgttcacaaacatctgcaagaagattggctttat |
9400033 |
T |
|
| Q |
101 |
tgtgctgaagatggtgttgcaataactcgacttgctttgcagtgcatagaattttttccagcaaatcgtccttcaatgagggatgtgttgcaaaatttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9400032 |
tgtgctgaagatggtgttgcaataactcgacttgctttgcagtgcatagaattttttccagcaaatcgtccttcaatgagggatgtgttgcaaaatttag |
9399933 |
T |
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| Q |
201 |
aaaatatttcggtattgcaacatttgtttgatgctagatcaactaaaagggagaagaagttgatttcatcatgatgcaaatttaaattaca |
291 |
Q |
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|||| |||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9399932 |
aaaagctttccgtgttgcaacatgtgtttgatgctagatcaactaaaagggagaagaagttgatttcatcatgatgcaaatttaaattaca |
9399842 |
T |
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