View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8498_low_13 (Length: 345)

Name: NF8498_low_13
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8498_low_13
NF8498_low_13
[»] chr7 (12 HSPs)
chr7 (13-241)||(24989732-24989960)
chr7 (13-197)||(45062518-45062702)
chr7 (16-203)||(7568128-7568315)
chr7 (19-194)||(23319928-23320103)
chr7 (83-241)||(8417677-8417835)
chr7 (16-211)||(18674552-18674747)
chr7 (16-194)||(41850963-41851142)
chr7 (16-210)||(48390269-48390464)
chr7 (16-211)||(48394111-48394306)
chr7 (237-318)||(23822116-23822197)
chr7 (109-165)||(965166-965222)
chr7 (13-61)||(8417896-8417944)
[»] chr4 (12 HSPs)
chr4 (13-241)||(43034076-43034304)
chr4 (16-211)||(30537580-30537775)
chr4 (13-241)||(50150264-50150491)
chr4 (16-211)||(3067776-3067970)
chr4 (16-211)||(782841-783037)
chr4 (16-210)||(27627802-27627996)
chr4 (13-212)||(36187366-36187566)
chr4 (16-241)||(26877181-26877409)
chr4 (73-241)||(25934359-25934526)
chr4 (16-205)||(33313285-33313475)
chr4 (16-61)||(25934545-25934590)
chr4 (16-61)||(22651802-22651847)
[»] chr3 (15 HSPs)
chr3 (13-241)||(54748009-54748237)
chr3 (15-241)||(26848108-26848334)
chr3 (13-241)||(25095948-25096161)
chr3 (16-241)||(35612967-35613194)
chr3 (16-203)||(48905583-48905770)
chr3 (16-241)||(50834025-50834251)
chr3 (16-241)||(50841602-50841828)
chr3 (69-241)||(25313382-25313555)
chr3 (16-212)||(22515686-22515885)
chr3 (16-203)||(9663855-9664039)
chr3 (16-241)||(23026233-23026461)
chr3 (24-194)||(49794914-49795083)
chr3 (16-241)||(46320452-46320678)
chr3 (16-194)||(20922722-20922901)
chr3 (87-163)||(33280340-33280416)
[»] chr8 (11 HSPs)
chr8 (13-241)||(13882104-13882331)
chr8 (15-211)||(8669782-8669978)
chr8 (15-241)||(29226295-29226520)
chr8 (13-241)||(37533785-37534014)
chr8 (16-241)||(32305726-32305952)
chr8 (16-194)||(35634740-35634918)
chr8 (16-241)||(8106912-8107137)
chr8 (16-194)||(42569968-42570148)
chr8 (87-184)||(36741715-36741815)
chr8 (20-61)||(45177557-45177598)
chr8 (75-210)||(17855397-17855533)
[»] chr2 (17 HSPs)
chr2 (13-241)||(10448737-10448965)
chr2 (25-240)||(11964170-11964384)
chr2 (13-241)||(41435555-41435783)
chr2 (15-241)||(21345029-21345252)
chr2 (16-241)||(39778599-39778827)
chr2 (75-241)||(22066384-22066550)
chr2 (16-194)||(25187004-25187182)
chr2 (16-241)||(10728242-10728468)
chr2 (16-203)||(7105610-7105797)
chr2 (16-241)||(10700173-10700399)
chr2 (16-241)||(42993755-42993981)
chr2 (16-241)||(13693479-13693704)
chr2 (13-241)||(36191520-36191750)
chr2 (16-212)||(19926736-19926931)
chr2 (16-212)||(28831005-28831201)
chr2 (126-241)||(41462684-41462800)
chr2 (15-49)||(22066346-22066380)
[»] chr1 (21 HSPs)
chr1 (13-212)||(1553763-1553963)
chr1 (27-241)||(27332899-27333113)
chr1 (13-241)||(35050251-35050479)
chr1 (13-241)||(30222711-30222939)
chr1 (16-241)||(16130461-16130689)
chr1 (13-241)||(45192519-45192747)
chr1 (16-241)||(5800387-5800611)
chr1 (16-241)||(16129907-16130139)
chr1 (16-241)||(27654624-27654848)
chr1 (16-212)||(40988017-40988213)
chr1 (16-208)||(36834287-36834474)
chr1 (79-241)||(9411746-9411909)
chr1 (16-177)||(27846418-27846580)
chr1 (16-194)||(34546716-34546893)
chr1 (13-145)||(35428415-35428551)
chr1 (16-193)||(4813700-4813878)
chr1 (15-194)||(23933266-23933446)
chr1 (137-212)||(35121218-35121293)
chr1 (81-174)||(13879068-13879161)
chr1 (13-166)||(11907972-11908123)
chr1 (15-106)||(35121301-35121392)
[»] chr6 (3 HSPs)
chr6 (16-241)||(1365663-1365890)
chr6 (16-241)||(7243365-7243591)
chr6 (16-241)||(24337965-24338187)
[»] chr5 (10 HSPs)
chr5 (69-241)||(21262900-21263072)
chr5 (18-241)||(40385185-40385412)
chr5 (16-212)||(33314376-33314572)
chr5 (13-241)||(24868485-24868714)
chr5 (16-211)||(3097496-3097695)
chr5 (16-237)||(41174609-41174831)
chr5 (73-194)||(4237918-4238039)
chr5 (13-61)||(21262548-21262596)
chr5 (19-106)||(4238151-4238237)
chr5 (266-312)||(29531858-29531904)
[»] scaffold0067 (1 HSPs)
scaffold0067 (16-194)||(6769-6949)
[»] scaffold0057 (1 HSPs)
scaffold0057 (16-193)||(30477-30654)
[»] scaffold0008 (1 HSPs)
scaffold0008 (16-241)||(258274-258491)
[»] scaffold0007 (1 HSPs)
scaffold0007 (266-309)||(216148-216191)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 24989960 - 24989732
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| ||||    
T  24989960 agaaaatacatttaaaatagtcatcttcatttaatacacttctacatttaaaaaaattctatgaatacccttaaattaattactctttattccatcaact 24989861  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc 212  Q
    ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  24989860 tacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttctaataaaaaggacc 24989761  T
Q  213 nnnnnnnttctcacttttgtttctaataa 241  Q
           ||||||||||||||||||||||    
T  24989760 aaaaaaattctcacttttgtttctaataa 24989732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 45062702 - 45062518
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||       |||||||||||||||||||||||||||| |||||||||| ||||    
T  45062702 agaaaatacattgaaaatagtcatcttcatttaatacacttttacatttaaaaaaattctatgaatacccttaaattaattactttttattccatcaact 45062603  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatctt 197  Q
    ||||||||| |||||||||||||||||||||| ||| ||||  |||||||||||||| ||||||| |||||||||||||||||||    
T  45062602 tacttacttttaatattctctctcataatcaacaagggcacagatgaaatttagctttaaacatatttgaaacttgatcaatctt 45062518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 7568128 - 7568315
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||       ||  |||||||||| |||||||||||||||||||||||  |||||||    
T  7568128 aaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttac 7568227  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttata 203  Q
    |||||| ||||||||||| ||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7568228 ttacttttaatattctctttcataataaataagggcacaaatgaaatttaccttcaaacatacttgaaacttgatcaatcttcttata 7568315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 23319928 - 23320103
Alignment:
Q  19 tacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttactta 118  Q
    |||||||||||||||||||||| |||||||||| |||||||||       ||| |||||||||| |||||||||||||||||||||||  ||||||||||    
T  23319928 tacattgaaaatagttatcttcgtttaatacacctctacatttaaaaaatttccatgaatacccctaaattaattactctttattccaccaacttactta 23320027  T
Q  119 cttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat 194  Q
    ||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  23320028 cttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaat 23320103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 83 - 241
Target Start/End: Complemental strand, 8417835 - 8417677
Alignment:
Q  83 ttaaattaattactctttattccataaacttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttga 182  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||||||    
T  8417835 ttaaattaattactctttattccatcaacttacttacttttaatattatctctcataattaataagggcacaaatgaaatttagcttcaaacatacttga 8417736  T
Q  183 aacttgatcaatcttcttatataaaggaccnnnnnnnttctcacttttgtttctaataa 241  Q
    ||||||||||||||||||||| |||||||        ||||||||||||||||||||||    
T  8417735 aacttgatcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataa 8417677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 18674747 - 18674552
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||||       ||  |||||||||| |||||||||||||||||||||||  |||||||    
T  18674747 aaatacattgaatatagtcatcttcatttaatacatttctacatttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttac 18674648  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggac 211  Q
    ||| ||  |||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  18674647 ttattttcaatattctctcttataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaattttcttataaaaaggac 18674552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 41850963 - 41851142
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttct-atgaatacccttaaattaattactctttattccataaactta 114  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||       || | |||||||||| |||||||||||||||||||||||  |||| |    
T  41850963 aaatacattgaaaattgttatcttcatttaatacacctctacatttaaatttttttttatgaatacccctaaattaattactctttattccaccaactca 41851062  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat 194  Q
    ||||||| ||||||||||||||||||| |||||| | || |||||||||||| ||||||||||||||||||||| |||||    
T  41851063 cttacttttaatattctctctcataataaataagggtacaaatgaaatttagtttcaaacatacttgaaacttggtcaat 41851142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 48390269 - 48390464
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccataaactta 114  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||        ||| |||||||||| ||||||||||| | |||||| ||| ||||||    
T  48390269 aaatacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattttttatttcatcaactta 48390367  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaagga 210  Q
    ||||||| |||||||||| |||||||| ||||||  ||| |||||||||||||||||||||||||||||||||| |||||  |||||||| ||||||    
T  48390368 cttacttttaatattctcactcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaagga 48390464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 48394111 - 48394306
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttct--atgaatacccttaaattaattactctttattccataaactt 113  Q
    |||||||||||||||| ||||||||||||||||||| ||||| |||       ||||  | |||||||| |||||||||||||||||||||||  |||||    
T  48394111 aaatacattgaaaatatttatcttcatttaatacacctctac-ttttttcttcttcttcaagaatacccctaaattaattactctttattccaccaactt 48394209  T
Q  114 acttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggac 211  Q
    |||||||| ||||||  ||| ||||||| |||||| |||| |||||||||||| ||||||||||||| ||||||| |||||  |||||||| |||||||    
T  48394210 acttacttttaatat--tctttcataataaataagggcacaaatgaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaaggac 48394306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 23822116 - 23822197
Alignment:
Q  237 aataacttacttttaatttgttttttaccaaattacatcagaagtcatttaagttatttaatagtaatcaattagttaagag 318  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  23822116 aataacttacttttaatttgtttttaatcaaattacatcataagtcatttaagttatttaatagtaatcaattagtttagag 23822197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 965166 - 965222
Alignment:
Q  109 aacttacttacttctaatattctctctcataatcaataagagcacgaatgaaattta 165  Q
    ||||||||||||| ||||||||| ||||||||| ||||||| ||| || ||||||||    
T  965166 aacttacttacttttaatattctttctcataataaataagaacacaaacgaaattta 965222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 8417944 - 8417896
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacattt 61  Q
    |||||||||||| |||||| | || ||||||||||||||||||||||||    
T  8417944 agaaaatacattaaaaatattcatattcatttaatacacttctacattt 8417896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 43034076 - 43034304
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| ||||    
T  43034076 agaaattacattgaaaatagtcatcttcatttaatacacttctacatttaaaataattctatgaatacccttaaattaattactctttattccatcaact 43034175  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc 212  Q
    ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  43034176 tacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggacc 43034275  T
Q  213 nnnnnnnttctcacttttgtttctaataa 241  Q
           ||||||||||||||||||||||    
T  43034276 aaaaaaattctcacttttgtttctaataa 43034304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 30537580 - 30537775
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||       ||  |||||||||| |||||||||||||||||||||||  |||||||    
T  30537580 aaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaatttttcatgaatacccctaaattaattactctttattccaccaacttac 30537679  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggac 211  Q
    |||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  30537680 ttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttataaaaaggac 30537775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 50150264 - 50150491
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    ||||||||||||||||||| | ||||||||||||||  |||||||||||       | ||| |||||||||||||||||||||| |||||||||| ||||    
T  50150264 agaaaatacattgaaaataatcatcttcatttaatatgcttctacatttaaaaaact-ctaggaatacccttaaattaattactttttattccatcaact 50150362  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc 212  Q
    ||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  50150363 tacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcaaacatacttaaaacttgatcaatcttcttataaaaaggacc 50150462  T
Q  213 nnnnnnnttctcacttttgtttctaataa 241  Q
           ||||| ||||||||||||||||    
T  50150463 aaaaaaattctcccttttgtttctaataa 50150491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 3067970 - 3067776
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||       ||| |||||||||  ||||||||||  ||||||||| |  ||||||     
T  3067970 aaatacattgaaaatagtcatcttcatttaatacacttctacatttagaaaaattc-atgaatacctctaaattaattcttctttattctactaacttat 3067872  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggac 211  Q
    |||||| |||| |||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  3067871 ttacttttaattttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttataaaaaggac 3067776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 783037 - 782841
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccataaactta 114  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||        ||| |||||||||| ||||||||||| |||||||||||  ||||||    
T  783037 aaatacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccaccaactta 782939  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggac 211  Q
    ||||||| ||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||||||||||| |||||  |||||||| |||||||    
T  782938 cttacttttaatattctctctcataataaataagggcacaaaagaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggac 782841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 27627996 - 27627802
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccataaactta 114  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||        ||  |||||||||| |||||||||||||||||||||||  ||||||    
T  27627996 aaatacattgaaaatagttatcttcatttaatatatttctacatttaaaaaaaattacatgaatacccctaaattaattactctttattccaccaactta 27627897  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaagga 210  Q
    ||||||| ||||||||||||  ||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||  |||||||| ||||||    
T  27627896 cttacttttaatattctctc--ataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaagga 27627802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 36187566 - 36187366
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccataaac 111  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||||        ||| |||||||||| ||||||||||| |||||||||||  |||    
T  36187566 agaaaatacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccaccaac 36187468  T
Q  112 ttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaagga 210  Q
    |||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||||| | |||  |||||||| ||||||    
T  36187467 ttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaatatacttgaaacttggttaatatttcttataaaaagga 36187368  T
Q  211 cc 212  Q
    ||    
T  36187367 cc 36187366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 26877409 - 26877181
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnt---tctatgaatacccttaaattaattactctttattccataaact 112  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||           || |||||||||| |||||||||||||||||||||||  ||||    
T  26877409 aaatacattgaaaatagttatcttcagttaatacacctctacatttaaaaaaaaaaatc-atgaatacccctaaattaattactctttattccaccaact 26877311  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggac 211  Q
    ||||||||| ||||||||| ||||||||| ||||||  ||| |||||||||||||||||||||||||| ||| ||| |||||  |||||||| |||||||    
T  26877310 tacttacttttaatattctatctcataataaataaggacacaaatgaaatttagcttcaaacatacttaaaatttggtcaatatttcttataaaaaggac 26877211  T
Q  212 cnnnnnnnttctcacttttgtttctaataa 241  Q
    |       ||||||||||||||||||||||    
T  26877210 caaaaaaattctcacttttgtttctaataa 26877181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 25934526 - 25934359
Alignment:
Q  73 atgaatacccttaaattaattactctttattccataaacttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaa 172  Q
    ||||||||||| ||||||||| ||||||||||||  |||||| ||| || |||| |||||||||||||| |||||| |||| ||||||||||| ||||||    
T  25934526 atgaataccct-aaattaattcctctttattccactaacttatttatttttaattttctctctcataataaataagggcacaaatgaaatttatcttcaa 25934428  T
Q  173 acatacttgaaacttgatcaatcttcttatataaaggaccnnnnnnnttctcacttttgtttctaataa 241  Q
    |||||||||||||||| |||||||||||||| |||||||        ||||||||||||||||||||||    
T  25934427 acatacttgaaacttggtcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataa 25934359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 33313475 - 33313285
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn--ttctatgaatacccttaaattaattactctttattccataaactt 113  Q
    ||||||||| |||||||| ||||||||||||||||||| || ||||         ||| ||||||| || ||||||||||  |||||||||||  |||||    
T  33313475 aaatacattaaaaatagtcatcttcatttaatacacttttatatttaaaaaaaaattc-atgaatatccataaattaattcatctttattccactaactt 33313377  T
Q  114 acttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatata 205  Q
    | |||||| |||| |||||||||||||| |||||| |||| ||| |||||||  || ||||||| || ||||||| | ||||||||||||||    
T  33313376 atttacttttaattttctctctcataataaataagggcacaaataaaatttatatttaaacatatttaaaacttggttaatcttcttatata 33313285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 25934590 - 25934545
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacattt 61  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||    
T  25934590 aaatacattgaaaatagtcatcttcatttaatacacttctatattt 25934545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 22651802 - 22651847
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacattt 61  Q
    |||||||||||||||| | |||||| ||||||||||||||| ||||    
T  22651802 aaatacattgaaaataatcatcttcttttaatacacttctatattt 22651847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 54748237 - 54748009
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||| || |    
T  54748237 agaaaatacgttgaaaatagttatcttcatttaatacacttctacatttaaaaaaattatatgaatacccttaaattaattactctttattccatcaatt 54748138  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc 212  Q
    ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54748137 tacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggacc 54748038  T
Q  213 nnnnnnnttctcacttttgtttctaataa 241  Q
           ||||||||||||||||||||||    
T  54748037 aaaaaaattctcacttttgtttctaataa 54748009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 26848108 - 26848334
Alignment:
Q  15 aaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaactta 114  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||       ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  26848108 aaaatacattgaaaatagtcatcttcatttaatacacttctacagttaaaaaaattctatgaacacccttaaattaattactctttattccatcaactta 26848207  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggaccnn 214  Q
    ||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||      
T  26848208 cttacttttaatattctctctcataatcaataagggcacaaaagaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaatgaccaa 26848307  T
Q  215 nnnnnttctcacttttgtttctaataa 241  Q
         ||||||||||||||| ||||||    
T  26848308 aaaaattctcacttttgtttataataa 26848334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 25095948 - 25096161
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    ||||||||||||||||||||| |||||||||||||||| |||||               |||||||||||||||||||||||||||||||||||| || |    
T  25095948 agaaaatacattgaaaatagtcatcttcatttaatacatttcta---------------tatgaatacccttaaattaattactctttattccatcaatt 25096032  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc 212  Q
    ||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  25096033 tacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaatttgatcaatcttcttataaaaaggacc 25096132  T
Q  213 nnnnnnnttctcacttttgtttctaataa 241  Q
           ||||||||||||||||||||||    
T  25096133 aaaaaaattctcacttttgtttctaataa 25096161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 35612967 - 35613194
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccataaactta 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||        ||| |||||||||| |||||||||||||||||||||||  ||||||    
T  35612967 aaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaattccatgaatacccctaaattaattactctttattccaccaactta 35613066  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggaccn 213  Q
     |||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||  |||||||| ||||||||     
T  35613067 tttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggacca 35613166  T
Q  214 nnnnnnttctcacttttgtttctaataa 241  Q
          ||||||||||||||||||||||    
T  35613167 aaaaaattctcacttttgtttctaataa 35613194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 48905583 - 48905770
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||       ||  |||||||||| |||||||||||||||||||||||  |||||||    
T  48905583 aaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttac 48905682  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttata 203  Q
    |||||| ||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  48905683 ttacttttaatattctctctcataataaataagggcacaaatgaaatttaccttcaaacatacttgaaacttggtcaatcttcttata 48905770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 50834251 - 50834025
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    ||||| ||||||||||||||||||||||||||| |  |||||||||        || ||||||||||||||||||||||||||||||||||  |||||||    
T  50834251 aaatatattgaaaatagttatcttcatttaatatatctctacatttaaaaaaaatccatgaatacccttaaattaattactctttattccaccaacttac 50834152  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggaccnn 214  Q
    |||||| ||||||||||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||| |||||  |||||||| ||||||||      
T  50834151 ttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaa 50834052  T
Q  215 nnnnnttctcacttttgtttctaataa 241  Q
         |||||||||||||| |||||||    
T  50834051 aaaaattctcacttttgttcctaataa 50834025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 50841602 - 50841828
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    ||||| ||||||||||||||||||||||||||| |  |||||||||        || ||||||||||||||||||||||||||||||||||  |||||||    
T  50841602 aaatatattgaaaatagttatcttcatttaatatatctctacatttaaaaaaaatccatgaatacccttaaattaattactctttattccaccaacttac 50841701  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggaccnn 214  Q
    |||||| ||||||||||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||| |||||  |||||||| ||||||||      
T  50841702 ttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaa 50841801  T
Q  215 nnnnnttctcacttttgtttctaataa 241  Q
         |||||||||||||| |||||||    
T  50841802 aaaaattctcacttttgttcctaataa 50841828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 69 - 241
Target Start/End: Complemental strand, 25313555 - 25313382
Alignment:
Q  69 ttctatgaatacccttaaattaattactctttattccataaacttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagct 168  Q
    |||||||||||||| ||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||||    
T  25313555 ttctatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagct 25313456  T
Q  169 tcaaacatacttgaaacttgatcaat-cttcttatataaaggaccnnnnnnnttctcacttttgtttctaataa 241  Q
    |||||||||||||||||||| |||||  |||||||| ||||||||       ||||||||||||||||||||||    
T  25313455 tcaaacatacttgaaacttggtcaatatttcttataaaaaggacccaaaaaattctcacttttgtttctaataa 25313382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 22515885 - 22515686
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttc--tacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaactt 113  Q
    |||||||||||||||||||||||||||||||||||| ||  |||||||       ||| || ||||  |||||||||||||||||||||||||  |||||    
T  22515885 aaatacattgaaaatagttatcttcatttaatacacctcaatacatttaaaaaaattccataaatattcttaaattaattactctttattccaccaactt 22515786  T
Q  114 acttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggacc 212  Q
    |||||||| ||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||||||||||| |||||  |||||||| ||||||||    
T  22515785 acttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaaggacc 22515686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 9663855 - 9664039
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||       ||  |||||||||| |||||||||||||||||||||||  |||||||    
T  9663855 aaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttac 9663954  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttata 203  Q
    |||||| ||||||  ||||||||||| |||||| |||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  9663955 ttacttttaatat--tctctcataataaataagggcacaaatgaaatttaccttcaaacat-cttgaaacttggtcaatcttcttata 9664039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 23026233 - 23026461
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnt---tctatgaatacccttaaattaattactctttattccataaact 112  Q
    |||||||||||||||||||||||||||||||||||  |||||||||           || |||||| ||| |||||||||||||||||||||||  ||||    
T  23026233 aaatacattgaaaatagttatcttcatttaatacatctctacatttaaaaaaaaaaatc-atgaatgcccctaaattaattactctttattccaccaact 23026331  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggac 211  Q
    ||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| || ||||||  |||||||| ||| |||    
T  23026332 tacttacttttaatattctctctcataatcaataagggcacaaatgaaatttaacttcaaacatacttgaaattttatcaatatttcttataaaaatgac 23026431  T
Q  212 cnnnnnnnttctcacttttgtttctaataa 241  Q
    |       ||||||||||||||||||||||    
T  23026432 caaaaaaattctcacttttgtttctaataa 23026461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 49794914 - 49795083
Alignment:
Q  24 tgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttacttacttct 123  Q
    |||||||||||||||||||||||||||| |||||||||       ||  |||||||||| | |||||||||||||||||||||  ||||||||||||| |    
T  49794914 tgaaaatagttatcttcatttaatacacctctacatttaattttttttcatgaataccccttaattaattactctttattccaccaacttacttactttt 49795013  T
Q  124 aatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat 194  Q
    |||||| ||||||||||| |||||||| || |||||||||||||||| |||||||||||||||||||||||    
T  49795014 aatattttctctcataataaataagagtacaaatgaaatttagcttc-aacatacttgaaacttgatcaat 49795083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 46320678 - 46320452
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||| || |||||||||||||| |||| ||||       ||| || || |||| |||||||||||||||||||| ||  |||||||    
T  46320678 aaatacattgaaaatagtaatattcatttaatacacctctatatttaagaaacttccattaacacccctaaattaattactctttatttcaccaacttac 46320579  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggaccnn 214  Q
    |||||| ||||||||||||||||||| |||||| | || ||||||||||| |||||||||||||| ||||||| |||||  |||||||| ||||||||      
T  46320578 ttacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaaggaccta 46320479  T
Q  215 nnnnnttctcacttttgtttctaataa 241  Q
         ||||||||||||||||||||||    
T  46320478 aaaaattctcacttttgtttctaataa 46320452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 20922722 - 20922901
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnt-tctatgaatacccttaaattaattactctttattccataaactta 114  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||         || ||||||| || ||||||||||| | |||||||||  ||||||    
T  20922722 aaatacattgaaaatatttatcttcatttaatacacctctacatttaaaaaaaaatcaatgaatatccctaaattaattattttttattccaccaactta 20922821  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat 194  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||| |||||    
T  20922822 cttacttttaatattctctctcataataaataagagcacaaatgaaatttagcttcaagaatacttgaaacttggtcaat 20922901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 33280340 - 33280416
Alignment:
Q  87 attaattactctttattccataaacttacttacttctaatattctctctcataatcaataagagcacgaatgaaatt 163  Q
    ||||| ||||||| ||||||  |||  |||||||| |||||||||||||| |||| ||||||| ||| |||||||||    
T  33280340 attaactactcttaattccaataaccaacttacttttaatattctctctcgtaataaataagaacacaaatgaaatt 33280416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 13882331 - 13882104
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| ||||    
T  13882331 agaaattacattgaaaatagtcatcttcatttaatacacttctacatttaaaataattctatgaatacccttaaattaattactctttattccatcaact 13882232  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc 212  Q
    ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  13882231 tacttactt-taatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggacc 13882133  T
Q  213 nnnnnnnttctcacttttgtttctaataa 241  Q
           ||||||||||| ||||||||||    
T  13882132 aaaaaaattctcacttttatttctaataa 13882104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 8669978 - 8669782
Alignment:
Q  15 aaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaactta 114  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||        | |||||||||||||||||||||||||||||||||||| ||||||    
T  8669978 aaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaaatttatgaatacccttaaattaattactctttattccatcaactta 8669879  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggac 211  Q
    ||||||| |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  8669878 cttacttttaatattctctctcataatcaataagggcacaaatgaaatttaacttcaaacatacttgaaacttgatcaatcttcttataaaaaggac 8669782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 29226520 - 29226295
Alignment:
Q  15 aaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaactta 114  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||| ||||||    
T  29226520 aaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaattctatcaatacccttaaattaattactctttattccatcaactta 29226421  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggaccnn 214  Q
    ||||||| ||||||| ||  |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |      
T  29226420 cttacttttaatattttcattcataatcaataag-gcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaacaa 29226322  T
Q  215 nnnnnttctcacttttgtttctaataa 241  Q
         ||||||||||||||||||||||    
T  29226321 aaaaattctcacttttgtttctaataa 29226295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 37534014 - 37533785
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccataaac 111  Q
    |||||||||||| |||||||| |||||||||||||||| ||||||||||        || |||||||||  ||||||||||||||||||||||||| |||    
T  37534014 agaaaatacattaaaaatagtcatcttcatttaatacatttctacatttaaaaaaaattatatgaatacatttaaattaattactctttattccatcaac 37533915  T
Q  112 ttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggac 211  Q
    ||||||| || |||||||||||||||||||||||||| |||| || |||||||| ||||||| ||| ||||||||||||||||||||| ||| ||||||     
T  37533914 ttacttatttttaatattctctctcataatcaataagggcacaaacgaaatttaacttcaaatatatttgaaacttgatcaatcttctaataaaaaggat 37533815  T
Q  212 cnnnnnnnttctcacttttgtttctaataa 241  Q
    |       ||||||||||||||| ||||||    
T  37533814 caaaaaaattctcacttttgtttataataa 37533785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 32305952 - 32305726
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccataaactta 114  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||        ||| |||||||||| ||||||||||| |||||||||||  ||||||    
T  32305952 aaatacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccaccaactta 32305854  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggaccn 213  Q
    ||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||  |||||||| ||||||||     
T  32305853 cttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggacca 32305754  T
Q  214 nnnnnnttctcacttttgtttctaataa 241  Q
          || |||||||||||||||||||    
T  32305753 aaaaaattttcacttttgtttctaataa 32305726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 35634740 - 35634918
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||        || ||||||| || |||||||||||||||||||  ||  |||||||    
T  35634740 aaatacattgaaaatagttatcttcatttaatacacttttacatttaaaaaaaatccatgaataaccctaaattaattactctttatcgcaccaacttac 35634839  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat 194  Q
    |||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  35634840 ttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaat 35634918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 8107137 - 8106912
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||        |  |||||||||| |||||||||| ||||||||||||  ||||||     
T  8107137 aaatacattgaaaatagtcctcttcatttaatacacttctacatttaaaaaaaattcatgaatacccctaaattaattcctctttattccactaacttat 8107038  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggaccnnn 215  Q
    |||||| |||| |||| ||||||||| ||||||  ||| |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| |       
T  8107037 ttacttttaattttctatctcataataaataaggacacaaatgaaatttagtttcaaacatacttgaaacttggtcaatcttcttataaaaaggatcaaa 8106938  T
Q  216 nnnnttctcacttttgtttctaataa 241  Q
        |||||| |||||||||||||||    
T  8106937 aaaattctcatttttgtttctaataa 8106912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 42570148 - 42569968
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnt--tctatgaatacccttaaattaattactctttattccataaactt 113  Q
    |||||||||||||||||||||||||||||||||||| | |||| ||          |||||||||| || ||||||||||||| |||||| ||| |||||    
T  42570148 aaatacattgaaaatagttatcttcatttaatacacctttacaattaaaaaaaaaatctatgaatatccctaaattaattactatttatttcatcaactt 42570049  T
Q  114 acttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat 194  Q
    ||||| || ||||||||||||||||||| |||||  |||| ||| ||||||||||||||  |||||| ||||||| |||||    
T  42570048 acttatttttaatattctctctcataataaataaatgcacaaataaaatttagcttcaatgatacttaaaacttggtcaat 42569968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 36741715 - 36741815
Alignment:
Q  87 attaattactctttattccataaacttacttacttctaatattctctc---tcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaa 183  Q
    ||||||||||||| ||||||  ||||||||||||| ||||||||||||   | ||||| ||||||  ||| |||||||||||||||| |||| | |||||    
T  36741715 attaattactcttaattccactaacttacttacttttaatattctctctaataataataaataaggacacaaatgaaatttagcttctaacacatttgaa 36741814  T
Q  184 a 184  Q
    |    
T  36741815 a 36741815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 45177557 - 45177598
Alignment:
Q  20 acattgaaaatagttatcttcatttaatacacttctacattt 61  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  45177557 acattgaaaatagtcatcttcatttaatacacttctacattt 45177598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 210
Target Start/End: Complemental strand, 17855533 - 17855397
Alignment:
Q  75 gaatacccttaaattaattactctttattccataaacttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaac 174  Q
    |||||||| ||||||||||||| ||   ||||| |||||| |||||| ||||| | | |||||| || ||||||   || |||||||||||| ||| |||    
T  17855533 gaatacccctaaattaattactattgcctccattaacttaattacttttaatactatttctcatcataaataaggatacaaatgaaatttagtttccaac 17855434  T
Q  175 atacttgaaacttgatcaat-cttcttatataaagga 210  Q
    | |||| ||| ||| |||||  |||||||| ||||||    
T  17855433 acacttaaaaattgttcaatatttcttataaaaagga 17855397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 10448965 - 10448737
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||       || ||||||||||||||||||||||||| |||||||||| ||||    
T  10448965 agaaaatatattgaaaatagtcatcttcatttaatacacttctacatttaaaaaagttatatgaatacccttaaattaattactatttattccatcaact 10448866  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc 212  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||    
T  10448865 tacttacttttaatattctctctcataatcaataagagcacaaatgaaatttaacttcaaacatacttgaaacttgatcaatcttcttataaagaggacc 10448766  T
Q  213 nnnnnnnttctcacttttgtttctaataa 241  Q
           ||||||||||||||||||||||    
T  10448765 aaaaaaattctcacttttgtttctaataa 10448737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 11964384 - 11964170
Alignment:
Q  25 gaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttacttacttcta 124  Q
    ||||||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  11964384 gaaaatagtcatcttcatttaatacacttctacatttaaaaaa-ttctatgaatacccttaaattaattactctttattccatcaacttacttactttta 11964286  T
Q  125 atattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggaccnnnnnnnttctc 224  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||       |||||    
T  11964285 atattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctc 11964186  T
Q  225 acttttgtttctaata 240  Q
    ||||||||||||||||    
T  11964185 acttttgtttctaata 11964170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 41435555 - 41435783
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||       ||  ||||||||||||||||||||||||||||||| ||| ||||    
T  41435555 agaaaatgcattgaaaatagtcatcttcatttaatacacttctacatttaattttttttcatgaatacccttaaattaattactctttatttcatcaact 41435654  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc 212  Q
    || |||||| ||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  41435655 tatttacttttaatattctatctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttattataaaaaggacc 41435754  T
Q  213 nnnnnnnttctcacttttgtttctaataa 241  Q
           ||||||||||||||||||||||    
T  41435755 aaaaaaattctcacttttgtttctaataa 41435783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 21345029 - 21345252
Alignment:
Q  15 aaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaactta 114  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||       |||||| |||||||||||||||||||||||||||||||| ||||||    
T  21345029 aaaatacattgaaaatagtcatcttcatttattacacttctacatttaaaacaattctataaatacccttaaattaattactctttattccatcaactta 21345128  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggaccnn 214  Q
    ||||||| ||||  ||||||||| ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||      
T  21345129 cttacttttaat--tctctctcacaatcaataaggacacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggacc-a 21345225  T
Q  215 nnnnnttctcacttttgtttctaataa 241  Q
         ||||||||||||||||||||||    
T  21345226 aaaaattctcacttttgtttctaataa 21345252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 39778599 - 39778827
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn--ttctatgaatacccttaaattaattactctttattccataaactt 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||         ||| ||||||||||||||||||||||||||||||||||  |||||    
T  39778599 aaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaaattccatgaatacccttaaattaattactctttattccaccaactt 39778698  T
Q  114 acttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggacc 212  Q
    |||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||  |||||||| ||||||||    
T  39778699 acttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggacc 39778798  T
Q  213 nnnnnnnttctcacttttgtttctaataa 241  Q
           || |||||||||||||||||||    
T  39778799 aaaaaaattttcacttttgtttctaataa 39778827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 75 - 241
Target Start/End: Original strand, 22066384 - 22066550
Alignment:
Q  75 gaatacccttaaattaattactctttattccataaacttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaac 174  Q
    |||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  22066384 gaatacccttaaattaattactttttattccatcaactaacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagctttaaac 22066483  T
Q  175 atacttgaaacttgatcaatcttcttatataaaggaccnnnnnnnttctcacttttgtttctaataa 241  Q
    ||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||    
T  22066484 atacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataa 22066550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 25187182 - 25187004
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||||||||||||||||||||| |||||||||       ||| ||||||| ||||||||||||||||||| ||||||  |||||||    
T  25187182 aaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaattccatgaatatccttaaattaattactcttaattccaccaacttac 25187083  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat 194  Q
    |||||| ||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||||||||||| |||||    
T  25187082 ttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaat 25187004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 10728242 - 10728468
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||        |  |||||||||| |||||||||||||||||||||||  |||||||    
T  10728242 aaatacattgaaaatagttatcttcagttaatacacctctacatttaaaaaaaattcatgaatacccctaaattaattactctttattccaccaacttac 10728341  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggaccnn 214  Q
    |||||| ||||||||||||||||||| |||||| |||  |||||||||||||||||||||||||||||||||  |||||  |||||||| ||||||||      
T  10728342 ttacttttaatattctctctcataataaataagggcataaatgaaatttagcttcaaacatacttgaaactttgtcaatatttcttataaaaaggaccaa 10728441  T
Q  215 nnnnnttctcacttttgtttctaataa 241  Q
         ||||||||||||||||||||||    
T  10728442 aaaaattctcacttttgtttctaataa 10728468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 7105797 - 7105610
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||       ||  |||||||||| |||||||||||||||||||||||  |||||||    
T  7105797 aaatacattgaaaatagtcatcttcatttaatacatttctacatttaaatttttttcatgaatacccctaaattaattactctttattccaccaacttac 7105698  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttata 203  Q
    |||||| ||||||| ||||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  7105697 ttacttttaatattttctctcataataaataagggcacaaatgaaatttaccttcaagcatacttgaaacttggtcaatcttcttata 7105610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 10700173 - 10700399
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||       ||| |||||||||| |||||||||||||||||||||||  ||||||     
T  10700173 aaatacattgaaaatagttattttcatttaatacacctctacatttaaaaaaattccatgaatacccctaaattaattactctttattccaccaacttat 10700272  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggaccnn 214  Q
    |||||| ||||||||||||||||||| | |||| |||| ||||||||||||||||| |||||||||||||||| |||||  |||||||| ||| |||       
T  10700273 ttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaaagactaa 10700372  T
Q  215 nnnnnttctcacttttgtttctaataa 241  Q
         ||||||||||||||||||||||    
T  10700373 aaaaattctcacttttgtttctaataa 10700399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 42993755 - 42993981
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||        || |||||||||| |||||||||| ||||||||||||  ||||||     
T  42993755 aaatacattgaaaatagtcatcttcatttaatacacttctatatttaaataaaatccatgaatacccctaaattaattcctctttattccactaacttat 42993854  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc-nn 214  Q
    |||||| |||| |||||||||||||  |||||| |||| ||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||       
T  42993855 ttacttttaattttctctctcataacaaataagggcacaaatgaaatttatcttcaaacatacttgaaatttggtcaatcttcttataaaaaggaccaaa 42993954  T
Q  215 nnnnnttctcacttttgtttctaataa 241  Q
         ||||||||||||||||||||||    
T  42993955 aaaaattctcacttttgtttctaataa 42993981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 13693479 - 13693704
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||        |  |||||||||| |||||||||| ||||||||||||  ||||||     
T  13693479 aaatacattgaaaatagtcatcttcatttaatacacttctatatttaaaaaatattcatgaatacccctaaattaattcctctttattccactaacttat 13693578  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggaccnnn 215  Q
    |||||| |||| |||||||||||||| ||||||  ||  ||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||       
T  13693579 ttacttttaattttctctctcataataaataaggacagaaatgaaatttatctttaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaa 13693678  T
Q  216 nnnnttctcacttttgtttctaataa 241  Q
        ||||||||||||||||||||||    
T  13693679 aaaattctcacttttgtttctaataa 13693704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 36191520 - 36191750
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnt---tctatgaatacccttaaattaattactctttattccataa 109  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| ||||           || || ||||||| ||||||||||||||||||||||| ||    
T  36191520 agaaaatacattgaaaatagttatctttatttaatacacctctatatttcaaaaaaaaaatc-attaatacccctaaattaattactctttattccacaa 36191618  T
Q  110 acttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaag 208  Q
     ||||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||  |||||  |||||||| ||||    
T  36191619 -cttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttagtcaatatttcttataaaaag 36191717  T
Q  209 gaccnnnnnnnttctcacttttgtttctaataa 241  Q
    ||||        |||||||||||||||||||||    
T  36191718 gaccaaaaaaaatctcacttttgtttctaataa 36191750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 19926736 - 19926931
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||| ||||||||||||||||||| ||||| |||        |  | |||||||| |||||||||||||||||||||||  |||||||    
T  19926736 aaatacattgaaaatatttatcttcatttaatacacctctacttttttttcttcttcaagaatacccctaaattaattactctttattccaccaacttac 19926835  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggacc 212  Q
    |||||| ||||||  ||||||||||| |||||| |||| |||||||||||| ||||||||||||| ||||||| |||||  |||||||| ||||||||    
T  19926836 ttacttttaatat--tctctcataataaataagggcacaaatgaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaaggacc 19926931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 28831201 - 28831005
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||        || |||||||||| |||||||||||||||||||| ||  || ||||    
T  28831201 aaatacattgaaaatagttatcttcatttaatacacctctacgttttaaaaaaatc-atgaatacccctaaattaattactctttattgcaccaatttac 28831103  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggacc 212  Q
    |||||| ||||||| ||||||||||| ||||||  ||| ||||||||||| |||||||||||||| ||| ||| |||||  |||||||| ||||||||    
T  28831102 ttacttttaatattttctctcataataaataaggacacaaatgaaatttaacttcaaacatacttaaaatttggtcaatatttcttataaaaaggacc 28831005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 41462800 - 41462684
Alignment:
Q  126 tattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggaccnnnnnnnttctc 224  Q
    |||||||||||||||| |||||| |||| ||||||||||| ||||||||||| || ||||||| |||||  |||||||| ||||||||       |||||    
T  41462800 tattctctctcataataaataagggcacaaatgaaatttaacttcaaacatatttaaaacttggtcaatatttcttataaaaaggacctaaaaaattctc 41462701  T
Q  225 acttttgtttctaataa 241  Q
    |||||||||||||||||    
T  41462700 acttttgtttctaataa 41462684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 22066346 - 22066380
Alignment:
Q  15 aaaatacattgaaaatagttatcttcatttaatac 49  Q
    ||||||||||||||||||| |||||||||||||||    
T  22066346 aaaatacattgaaaatagtcatcttcatttaatac 22066380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 7e-71; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 1553963 - 1553763
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||| ||||    
T  1553963 agaaaatacattgaaaatagtcaacttcatttaatacacttctacatttaaaaaaattctataaatacccttaaattaattactctttattccatcaact 1553864  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggac 211  Q
    ||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  1553863 tacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaatttgatcaatacttcttataaaaaggac 1553764  T
Q  212 c 212  Q
    |    
T  1553763 c 1553763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 27332899 - 27333113
Alignment:
Q  27 aaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttacttacttctaat 126  Q
    ||||||| |||||||||||||||||||||| ||||       |||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  27332899 aaatagtcatcttcatttaatacacttctatatttaaaaaaattctataaatacccttaaattaattactctttattccattaacttacttacttttaat 27332998  T
Q  127 attctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggaccnnnnnnnttctcac 226  Q
    ||| |||||||||||||||||| | || |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||       |||||||    
T  27332999 attttctctcataatcaataagggtacaaatgaaatttagcttcaaacatacttaaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcac 27333098  T
Q  227 ttttgtttctaataa 241  Q
    |||||||||||||||    
T  27333099 ttttgtttctaataa 27333113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 35050251 - 35050479
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||          |||| ||||||||||||||||||||||||||| ||| ||||    
T  35050251 agaaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaaaaatatgtatacccttaaattaattactctttatttcatcaact 35050350  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc 212  Q
    ||||||||| ||||||||||||||||||||||||||  ||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||| |||    
T  35050351 tacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcagacatacttgaaacttgatcgatctttttataaaaagaacc 35050450  T
Q  213 nnnnnnnttctcacttttgtttctaataa 241  Q
           ||||||||||||||||||||||    
T  35050451 aaaaaaattctcacttttgtttctaataa 35050479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 30222939 - 30222711
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||        | |||||||| ||||||||||||||||||||| ||||| ||||    
T  30222939 agaaaatacattgaaaatagtcatcttcatttaatatacttctacatttaaaaaaagtatatgaatatccttaaattaattactctttaatccatcaact 30222840  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc 212  Q
    ||||||||| ||||||||||| ||||||||||||||| ||| |||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| || |    
T  30222839 tacttacttttaatattctctttcataatcaataagaacacaaatgaattttagcatcaaacatatttgaaacttgatcaatcttcttataaaaatgatc 30222740  T
Q  213 nnnnnnnttctcacttttgtttctaataa 241  Q
           |||||| |||||||||||||||    
T  30222739 aaaaaaattctcatttttgtttctaataa 30222711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 16130461 - 16130689
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnt--tctatgaatacccttaaattaattactctttattccataaactt 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||          || |||||||||||||||||||||||| |||||||||  |||||    
T  16130461 aaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaaaatccatgaatacccttaaattaattactttttattccaccaactt 16130560  T
Q  114 acttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggacc 212  Q
    |||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||  |||||||| ||||||||    
T  16130561 acttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggacc 16130660  T
Q  213 nnnnnnnttctcacttttgtttctaataa 241  Q
           || |||||||||||||||||||    
T  16130661 aaattttttttcacttttgtttctaataa 16130689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 45192519 - 45192747
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||       ||| ||||||||||||||||||||||||||||||||||| ||||    
T  45192519 agaaaatacattgaaaatagtcatcttcatttaatatacttctacatttaaaaaaattccatgaatacccttaaattaattactctttattccatcaact 45192618  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc 212  Q
    |||||| || ||||||||| ||||||||| ||||||| ||| |||||| |||||| | ||| ||| | ||||||| ||||||||||||||| |||||| |    
T  45192619 tacttatttttaatattctgtctcataattaataagaacacaaatgaattttagcataaaaaatattagaaacttaatcaatcttcttataaaaaggatc 45192718  T
Q  213 nnnnnnnttctcacttttgtttctaataa 241  Q
           ||||||||||||||||||||||    
T  45192719 aaaaaaattctcacttttgtttctaataa 45192747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 5800387 - 5800611
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||| |||||||||||||||||||||| |||        ||| |||||||||| |||||||||| ||||||||||||  ||||||     
T  5800387 aaatacattgaaaatagtcatcttcatttaatacacttctatattaaaaaaaattc-atgaatacccctaaattaatttctctttattccactaacttat 5800485  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggaccnnn 215  Q
    |||||| |||| |||||||||||||| ||||||  ||| ||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||       
T  5800486 ttacttttaattttctctctcataataaataaggacacaaatgaaatttatcttcaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaa 5800585  T
Q  216 nnnnttctcacttttgtttctaataa 241  Q
        ||| ||||||||||||||||||    
T  5800586 aaaattcccacttttgtttctaataa 5800611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 16129907 - 16130139
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnt------tctatgaatacccttaaattaattactctttattccataa 109  Q
    |||||||||||||||||||||||||||||||||||| | |||||||              || |||||||||| ||||||||||||| |||||||||  |    
T  16129907 aaatacattgaaaatagttatcttcatttaatacacctttacatttaaaaaaaaaaaaaatccatgaatacccctaaattaattactttttattccacca 16130006  T
Q  110 acttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaag 208  Q
    |||||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||  |||||||| ||||    
T  16130007 acttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 16130106  T
Q  209 gaccnnnnnnnttctcacttttgtttctaataa 241  Q
    ||||       || |||||||||||||||||||    
T  16130107 gaccaaattttttttcacttttgtttctaataa 16130139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 27654848 - 27654624
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||||       ||| || || |||| |||||||||||||||||||||||  |||||||    
T  27654848 aaatacattgaaaatagtaatcttcatttaatacacctctatatttaagaaaattccattaaaacccctaaattaattactctttattccaccaacttac 27654749  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggaccnn 214  Q
    |||||| ||||||||||||  ||||| |||||| |||| ||||||||||| ||||||| |||||| |||||||||||||  |||||||| ||||||||      
T  27654748 ttacttttaatattctctc--ataataaataagggcacaaatgaaatttaacttcaaagatacttaaaacttgatcaatatttcttataaaaaggaccaa 27654651  T
Q  215 nnnnnttctcacttttgtttctaataa 241  Q
         ||||||||||||||||||||||    
T  27654650 aaaaattctcacttttgtttctaataa 27654624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 40988017 - 40988213
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccataaactta 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||        ||| |||||||||| ||||||||||||||||||||||   ||||||    
T  40988017 aaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaattcaatgaatacccctaaattaattactctttattccgccaactta 40988116  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggacc 212  Q
    ||||||| ||||||  ||||||||||| |||||| |||| |||||||||||| ||||||||||||| ||||||| |||||  |||||||| ||||||||    
T  40988117 cttacttttaatat--tctctcataataaataagggcacaaatgaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaaggacc 40988213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 36834474 - 36834287
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||||       ||| |||||||||  |||||||||||||||||||||||  |||||||    
T  36834474 aaatacattaaaaatagtcatctttatttaatacacttctacatttaaaaaatttc-atgaatacc--taaattaattactctttattccaccaacttac 36834378  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaag 208  Q
    |||||| |||||||||||   ||||| |||||| | || |||||||||||||||||||||||||||||| || |||||| |||||||| ||||    
T  36834377 ttacttttaatattctctt--ataataaataagggtacaaatgaaatttagcttcaaacatacttgaaatttaatcaattttcttataaaaag 36834287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 9411909 - 9411746
Alignment:
Q  79 acccttaaattaattactctttattccataaacttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatac 178  Q
    |||| |||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||| |||||| |||| | ||||||||| ||||||| ||||    
T  9411909 acccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaagtgaaatttaacttcaaatatac 9411810  T
Q  179 ttgaaacttgatcaat-cttcttatataaaggaccnnnnnnnttctcacttttgtttctaataa 241  Q
    |||||||||| |||||  |||||||| ||||||||       || |||||||||||||||||||    
T  9411809 ttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataa 9411746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 27846580 - 27846418
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccataaactta 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||        ||| ||||||| |||||||||||||||| | |||||||  ||||||    
T  27846580 aaatactttgaaaatagttatcttcatttaatacacttctacatttaaaaacaattccatgaatatccttaaattaattactatctattccaccaactta 27846481  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacata 177  Q
    ||||||| ||||||| ||||||||||| |||||| | || ||||||||||| |||||||||||    
T  27846480 cttacttttaatattatctctcataataaataagggtacaaatgaaatttaacttcaaacata 27846418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 34546893 - 34546716
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn---ttctatgaatacccttaaattaattactctttattccataaact 112  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||          ||| |||||||||| |||||||||||||||||||||||  ||||    
T  34546893 aaatacattgaaaatagttatcttcatttaatgcacctttacatttaaaaaaaaaattc-atgaatacccctaaattaattactctttattccaccaact 34546795  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat 194  Q
    ||||||||| ||||||  | ||||||||| |||||| |||  ||||||| |||||||||||||||||| |||||||||||||    
T  34546794 tacttacttttaatat--tttctcataataaataagggcagaaatgaaa-ttagcttcaaacatacttaaaacttgatcaat 34546716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 35428551 - 35428415
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattcc----ata 108  Q
    ||||||||||||||||||||| |||||||||||| || |||||| ||||       || ||||||||||||||||||||||||||||||||||    ||     
T  35428551 agaaaatacattgaaaatagtcatcttcatttaacacgcttctatattttaaaaatttttatgaatacccttaaattaattactctttattccatcaatc 35428452  T
Q  109 aacttacttacttctaatattctctctcataatcaat 145  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  35428451 aacttacttacttttaattttctctctcataatcaat 35428415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 4813700 - 4813878
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnntt-ctatgaatacccttaaattaattactctttattccataaactta 114  Q
    ||||||||| |||||||||||||||||||||||||| ||| |||||       || | ||||||||| |||||||||||||| || ||||||  ||||||    
T  4813700 aaatacattaaaaatagttatcttcatttaatacacctctccatttaaatagttttccatgaatacctttaaattaattacttttcattccaccaactta 4813799  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaa 193  Q
    ||||||| ||||||||  ||||||||| |||||| |||| |||||||||||| ||||| || |||| ||| ||| ||||    
T  4813800 cttacttttaatattccttctcataataaataagggcacaaatgaaatttagtttcaagcacacttaaaaattggtcaa 4813878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 23933266 - 23933446
Alignment:
Q  15 aaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaactta 114  Q
    ||||||||||||||||| |||| ||| ||||||| || |||||||||       ||  |||||||||| |||||||||||||||| |||| |  |||||     
T  23933266 aaaatacattgaaaataattattttcttttaatatacctctacatttaattttttttcatgaatacccctaaattaattactcttgattctaccaacttt 23933365  T
Q  115 cttacttct-aatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat 194  Q
    |||| || | |||||||||||  ||||| |||||| |||| ||||||||||| ||||||||| | |||||| ||| |||||    
T  23933366 cttattttttaatattctctcatataataaataagggcacaaatgaaatttaacttcaaacacatttgaaaattggtcaat 23933446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 35121293 - 35121218
Alignment:
Q  137 ataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc 212  Q
    ||||| |||||| |||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  35121293 ataataaataagggcacaaatgaaattttgcttcaaacatacttgaaacttggtcaatcttcttataaaaaggacc 35121218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 13879068 - 13879161
Alignment:
Q  81 ccttaaattaattactctttattccataaacttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaac 174  Q
    |||||||||||||||||||| |||||  |||||| |||||  ||||||||| ||||||||| |||||| |||| ||||||||||||||| ||||    
T  13879068 ccttaaattaattactctttcttccaccaacttatttactattaatattctatctcataataaataagggcacaaatgaaatttagctttaaac 13879161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 11908123 - 11907972
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    ||||||||||||||||||   ||| ||||||||||||   | |||||||       ||| ||||||||| ||| ||||||||||||| ||||||  ||||    
T  11908123 agaaaatacattgaaaatgactattttcatttaatacttctgtacatttaaatttcttccatgaatacctttacattaattactcttgattccaccaact 11908024  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttag 166  Q
    || ||| || |||||  |||||||||||| |||||   ||| ||||||||||||    
T  11908023 tatttatttttaata--ctctctcataataaataaagacacaaatgaaatttag 11907972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 35121392 - 35121301
Alignment:
Q  15 aaaatacattgaaaatagttatcttcatttaatacacttctacattt--nnnnnnnttctatgaatacccttaaattaattactctttattcca 106  Q
    ||||||||||| ||||||| |||||||||||||||||||| ||||||         ||| ||||||||||||||||||||| ||||||||||||    
T  35121392 aaaatacattggaaatagtcatcttcatttaatacacttc-acatttaaaaaaaaattc-atgaatacccttaaattaattcctctttattcca 35121301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 1365890 - 1365663
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccataaactta 114  Q
    |||||||||||||||||||||||||||||||||||  |||||||||        ||| ||||||||||||||||||||||||||||||||||  ||||||    
T  1365890 aaatacattgaaaatagttatcttcatttaatacatctctacatttacaaaaaattccatgaatacccttaaattaattactctttattccaccaactta 1365791  T
Q  115 cttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggaccn 213  Q
    ||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||  |||||||| ||||||||     
T  1365790 cttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggacca 1365691  T
Q  214 nnnnnnttctcacttttgtttctaataa 241  Q
          ||||||||||||||||||||||    
T  1365690 acaaaattctcacttttgtttctaataa 1365663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 7243365 - 7243591
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||||||||||||||||||||| |||||||||        || |||||||||| ||||||||||| |||||||||||  |||||||    
T  7243365 aaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaatccatgaatacccctaaattaattattctttattccaccaacttac 7243464  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggaccnn 214  Q
    |||||| ||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||| |||||  |||||||| ||| ||||      
T  7243465 ttacttttaatattctctctcataataaataagggcacaaatgaaatttaacttcaaacatacttgaaacttggtcaatatttcttataaaaaagaccaa 7243564  T
Q  215 nnnnnttctcacttttgtttctaataa 241  Q
         ||||||||||||||| ||||||    
T  7243565 aaaagttctcacttttgtttataataa 7243591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 24337965 - 24338187
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||||||||||||||||    | |||||||||       ||| ||||||| || |||||||||||||||||||||||  |||||||    
T  24337965 aaatacattgaaaatagttatcttcatttaa----cctctacatttaaaaaaattccatgaataaccctaaattaattactctttattccaccaacttac 24338060  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggaccnn 214  Q
    |||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||  |||||||| ||| ||||      
T  24338061 ttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaagaccaa 24338160  T
Q  215 nnnnnttctcacttttgtttctaataa 241  Q
         ||||||||||||||||||||||    
T  24338161 aaaaattctcacttttgtttctaataa 24338187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 69 - 241
Target Start/End: Original strand, 21262900 - 21263072
Alignment:
Q  69 ttctatgaatacccttaaattaattactctttattccataaacttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagct 168  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | || | ||||||||||||||    
T  21262900 ttctataaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaatatgggcgcaaatgaaatttagct 21262999  T
Q  169 tcaaacatacttgaaacttgatcaatcttcttatataaaggaccnnnnnnnttctcacttttgtttctaataa 241  Q
    ||||||||||||||||||||||||||||||||||| ||||||||       || |||||||||||||||||||    
T  21263000 tcaaacatacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattatcacttttgtttctaataa 21263072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 40385185 - 40385412
Alignment:
Q  18 atacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnt-tctatgaatacccttaaattaattactctttattccataaacttact 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||         || |||||||||| |||||||||| ||||||||||||  |||||| |    
T  40385185 atacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaataatccatgaatacccctaaattaattcctctttattccactaacttatt 40385284  T
Q  117 tacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttctt---atataaaggaccn 213  Q
    ||||| |||| |||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||   ||| ||||||||     
T  40385285 tacttttaattttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttcttataaaaaggacca 40385384  T
Q  214 nnnnnnttctcacttttgtttctaataa 241  Q
          ||||||||||||||||||||||    
T  40385385 aaaaaattctcacttttgtttctaataa 40385412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 33314572 - 33314376
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    ||||||||||||||| || |||||||||||||||| ||||||| ||       ||  |||||||  | |||||||||||||||||||||||  ||||| |    
T  33314572 aaatacattgaaaatggtcatcttcatttaatacatttctacacttaaaaaaatttcatgaatattcctaaattaattactctttattccaccaacttgc 33314473  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggacc 212  Q
    |||||| ||||||||||||||||||| ||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  33314472 ttacttttaatattctctctcataataaatgagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggacc 33314376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 24868714 - 24868485
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaact 112  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| | ||       ||| || || |||| |||||||||||||||||||||||  ||||    
T  24868714 agaaaatacattgaaaatagtaatcttcatttaatacacctctataattaagaaaattccattaacacccctaaattaattactctttattccaccaact 24868615  T
Q  113 tacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggac 211  Q
    ||||||||| ||||||||||||||||||| |||||| | || ||||||||||| |||||||||||||||||||||| |||||  |||||||| ||| |||    
T  24868614 tacttacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatacttgaaacttggtcaatatttcttataaaaaagac 24868515  T
Q  212 cnnnnnnnttctcacttttgtttctaataa 241  Q
            ||||||||||||||||||||||    
T  24868514 aaaaaaaattctcacttttgtttctaataa 24868485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 3097496 - 3097695
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnt----tctatgaatacccttaaattaattactctttattccataaac 111  Q
    |||||||||||||||||| |||||||||||||||||||||||||||            || ||| |||||| |||||||| | ||||||||||||  |||    
T  3097496 aaatacattgaaaatagtaatcttcatttaatacacttctacatttaaaaaaaaaaaatccatgtatacccctaaattaaatcctctttattccactaac 3097595  T
Q  112 ttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggac 211  Q
    ||| |||||| |||| ||| |||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  3097596 ttatttacttttaattttcactctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttataaaaaggac 3097695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 41174609 - 41174831
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnn--ttctatgaatacccttaaattaattactctttattccataaactt 113  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||         ||| |||||||||| | |||||||| ||||||||| ||  |||||    
T  41174609 aaatacattgaaaatagtcatcttcatttaatatacttctatattttaaaaaaaattc-atgaatacccctcaattaattcctctttatttcactaactt 41174707  T
Q  114 acttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttatataaaggaccn 213  Q
    | |||||| |||  |||||||||||||| |||||| |||| ||||||||||||||| ||| |||||||||||||| |||||||||||||| ||||||||     
T  41174708 atttacttttaactttctctctcataataaataagggcacaaatgaaatttagcttaaaatatacttgaaacttggtcaatcttcttataaaaaggacca 41174807  T
Q  214 nnnnnnttctcacttttgtttcta 237  Q
          ||||||||||||||||||    
T  41174808 aaaaaattctcacttttgtttcta 41174831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 4238039 - 4237918
Alignment:
Q  73 atgaatacccttaaattaattactctttattccataaacttacttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaa 172  Q
    |||||||||| |||||||||||||||| ||||||  || ||||||  || || |||||| ||||||||| |||||  |||| ||||||||||| ||||||    
T  4238039 atgaatacccctaaattaattactcttgattccaccaatttacttcattttattattctatctcataataaataacggcacaaatgaaatttaacttcaa 4237940  T
Q  173 acatacttgaaacttgatcaat 194  Q
    |||| | ||||| || ||||||    
T  4237939 acatccatgaaaatttatcaat 4237918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 21262548 - 21262596
Alignment:
Q  13 agaaaatacattgaaaatagttatcttcatttaatacacttctacattt 61  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  21262548 agaaaatacattgaaaatagtcatcttcatttaatacgcttctacattt 21262596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 4238237 - 4238151
Alignment:
Q  19 tacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattcca 106  Q
    ||||||||||||||||||||||||||||||||  |||||||||       |||  ||||||||| |||||||||||||||| ||||||    
T  4238237 tacattgaaaatagttatcttcatttaatacatctctacattt-aattttttccctgaatacccctaaattaattactcttgattcca 4238151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 29531858 - 29531904
Alignment:
Q  266 aaattacatcagaagtcatttaagttatttaatagtaatcaattagt 312  Q
    ||||||||| ||| ||||||||||||||||||| ||||| |||||||    
T  29531858 aaattacatgagatgtcatttaagttatttaattgtaataaattagt 29531904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 6949 - 6769
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnntt--ctatgaatacccttaaattaattactctttattccataaactt 113  Q
    |||||||||||||||||||||||||||||||||||  |||||||||       ||  ||||||||| |||||||||||||||||||||||| |  |||||    
T  6949 aaatacattgaaaatagttatcttcatttaatacatctctacatttaatttttttttctatgaatatccttaaattaattactctttattctaccaactt 6850  T
Q  114 acttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat 194  Q
    |||||||| ||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  6849 acttacttttaatattctttctcataataaataagcgcacaaatgaaatttagcttcaaacatacttgaaacttggtcaat 6769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 30654 - 30477
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    ||||||||||||||||||||| || ||||||||||| ||| |||||       ||| || ||||||| |||||||||||||||| |||||   |||||||    
T  30654 aaatacattgaaaatagttattttaatttaatacacctctgcatttaaattttttccataaatacccctaaattaattactcttgattccgccaacttac 30555  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaa 193  Q
    |||||| ||||||| ||||||||||| |||||| |||| |||||||||||  |||||||| |||||||| ||| ||||    
T  30554 ttacttttaatattgtctctcataataaataagggcacaaatgaaatttaatttcaaacaaacttgaaaattggtcaa 30477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 258274 - 258491
Alignment:
Q  16 aaatacattgaaaatagttatcttcatttaatacacttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccataaacttac 115  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||||       ||| || || |||| |||||||||||||||         ||||||||    
T  258274 aaatacattgaaaatagtaatcttcatttaatacacctctatatttaagaaaattccatcaacacccctaaattaattactct---------aaacttac 258364  T
Q  116 ttacttctaatattctctctcataatcaataagagcacgaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttatataaaggaccnn 214  Q
    ||| || ||||||||||||||||||| |||||  |||| ||||||||||| |||||||||||||| ||||||| |||||  |||||||| ||||||||      
T  258365 ttaattttaatattctctctcataataaataaaggcacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaaggaccta 258464  T
Q  215 nnnnnttctcacttttgtttctaataa 241  Q
         ||||||||||||||||||||||    
T  258465 aaaaattctcacttttgtttctaataa 258491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 216191 - 216148
Alignment:
Q  266 aaattacatcagaagtcatttaagttatttaatagtaatcaatt 309  Q
    |||||||||||||| |||||||||||||||||| |||| |||||    
T  216191 aaattacatcagaaatcatttaagttatttaattgtaaccaatt 216148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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