View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8498_low_14 (Length: 338)
Name: NF8498_low_14
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 51876286 - 51876604
Alignment:
| Q |
1 |
ttttatcattctgtccggcccataattctactgaaaaacactttaattcttccaatgttgaactctcatggattgtacgggccatgatttttcttgtgca |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51876286 |
ttttatcattctgtccgggccataattctactgaaaaacactttaattcttccaatgttgaactctcatggattgtacgggccatgatttttcttgtgca |
51876385 |
T |
|
| Q |
101 |
tctaagcctcacactacatactatatttttcttgaagataatccgtacattttgttgaacaattattgaaattataatttttctcgatctagattcaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| |
|
|
| T |
51876386 |
tctaagcctcacactacatactatatttttcttgaagataatcagtacattttgttgaacaattattgaaattacaatttttctcgatcgagagtcaaac |
51876485 |
T |
|
| Q |
201 |
tttgatttggtttgtcatgttgcgagagactaatttttatgtaatacatgaacatgcgcatagtattatatatgaaatatgattgtggaagaaagaaaca |
300 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51876486 |
tttgatttgatttgtcatgttgcgagagtctaatttttatgtaatacatgaacatgcgcataatattatatatgaaatatgattgtggaagaaagaaaca |
51876585 |
T |
|
| Q |
301 |
tgtttgtgtatgcattatg |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
51876586 |
tgtttgtgtatgcattatg |
51876604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University