View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8498_low_18 (Length: 300)
Name: NF8498_low_18
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 114 - 284
Target Start/End: Original strand, 13888494 - 13888664
Alignment:
| Q |
114 |
cttaattgtcgaataaaaacatttttctcctccgagtcttaaaggccattcattaagtgccactcatttcgcaaataggatcgtgcaaacaacaaaacaa |
213 |
Q |
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| T |
13888494 |
cttaattctcgaataaaaacatttttctcctccgagtcttaaaggccattcattaagtgccactcatttcgtaaataggatcgtgcaaacaacaaaacaa |
13888593 |
T |
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| Q |
214 |
gtggagagaaagatattagttcaatatgatatgagaagaaattcaaattttatattagagattttgatgtc |
284 |
Q |
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| T |
13888594 |
gtggagagaaagatagtagttcaatatgatatgagaagaaattcgaattttatattagagattttgatgtc |
13888664 |
T |
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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 13887121 - 13887236
Alignment:
| Q |
1 |
cgaacaacaataaacatatttttccataaatggaataaattnnnnnnntgttgattctctctccacaaacatatcttagttgaactatgtgatcataaaa |
100 |
Q |
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| T |
13887121 |
cgaacaacaataaacatatttttccataaatggattaaattaaaaac-tgtt-attctctctccacaattgtatcatagttcaactatgtgatcctaaaa |
13887218 |
T |
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| Q |
101 |
taaaatcattagacttaa |
118 |
Q |
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| T |
13887219 |
taaaatcattagacttaa |
13887236 |
T |
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