View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8498_low_19 (Length: 294)
Name: NF8498_low_19
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 2621757 - 2622023
Alignment:
| Q |
18 |
aattggtatagaagagctgattacactgcttatgctttcaacacacgtcctgttactcgacacccttgtcagaagccttttgtgttttacctttcaaaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621757 |
aattggtatagaagagctgattacactgcttatgctttcaacacacgtcctgttactcgacacccttgtcagaagccttttgtgttttacctttcaaaag |
2621856 |
T |
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| Q |
118 |
caaaattcaattctacaatacaacagacagtgagtgaatatgaaaaacatcgtgttcctcatccggaatgccgatggaaaatggctaatccttctgctct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621857 |
caaaattcaattctacaatacaacagacagtgagtgaatatgaaaaacatcgtgttcctcatccggaatgccgatggaaaatggctaatccttctgctct |
2621956 |
T |
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| Q |
218 |
tgacaaagttgtcgtatataagaagccagacccgcatctatgggatagagtacgttcttcttctctg |
284 |
Q |
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| T |
2621957 |
tgacaaagttgtcgtatataagaagccagacccgcatctatgggatagagtacgttcttcttctctg |
2622023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 41316890 - 41316639
Alignment:
| Q |
18 |
aattggtatagaagagctgattacactgcttatgctttcaacacacgtcctgttactcgacacccttgtcagaagccttttgtgttttacctttcaaaag |
117 |
Q |
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|||||||| |||||||| ||||||||||| ||||| |||||||| ||||| |||| ||| | || ||||||||||||||||| |||||| | ||||| | |
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| T |
41316890 |
aattggtacagaagagcagattacactgcatatgcattcaacacgcgtccggttagccgaaatccatgtcagaagccttttgtattttacttctcaaagg |
41316791 |
T |
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| Q |
118 |
caaaattcaattctacaatacaacagacagtgagtgaatatgaaaaacatcgtgttcctcatccggaatgccgatggaaaatggctaatccttctgctct |
217 |
Q |
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| T |
41316790 |
caaaatacaatgatacaacagaacaaacactgactgaatatgaaaggcatcgtgttcctcacccagaatgccggtggaagatggccaatccttcttctgt |
41316691 |
T |
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| Q |
218 |
tgacaaagttgtcgtatataagaagccagacccgcatctatgggatagagta |
269 |
Q |
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||||| ||| | ||||||||||||||||| || |||||||||||||||||| |
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| T |
41316690 |
tgacagagtggaggtatataagaagccagatccacatctatgggatagagta |
41316639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 22775651 - 22775578
Alignment:
| Q |
18 |
aattggtatagaagagctgattacactgcttatgctttcaacacacgtcctgttactcgacacccttgtcagaa |
91 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| | ||||| || ||||||||||||||| |
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| T |
22775651 |
aattggtatagaagagctgattacactgcttatgcattcaacacaaggcctgtaaccaaacacccttgtcagaa |
22775578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 40944399 - 40944317
Alignment:
| Q |
18 |
aattggtatagaagagctgattacactgcttatgctttcaacacacgtcctgttactcgacacccttgtcagaagccttttgt |
100 |
Q |
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||||||||||||||||||||||| ||||| ||||| ||||||||| | |||||| || ||| |||||||| ||||| ||||| |
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| T |
40944399 |
aattggtatagaagagctgattatactgcatatgcattcaacacaaggcctgttgctaaacatccttgtcaaaagccctttgt |
40944317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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