View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8498_low_21 (Length: 269)

Name: NF8498_low_21
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8498_low_21
NF8498_low_21
[»] chr3 (7 HSPs)
chr3 (117-235)||(8529511-8529629)
chr3 (120-202)||(10566459-10566541)
chr3 (120-202)||(10569709-10569791)
chr3 (164-222)||(8511409-8511467)
chr3 (120-202)||(20282972-20283054)
chr3 (120-202)||(29673817-29673899)
chr3 (121-202)||(8545689-8545770)
[»] chr5 (7 HSPs)
chr5 (120-202)||(38485311-38485393)
chr5 (121-202)||(36101340-36101421)
chr5 (121-199)||(41195196-41195274)
chr5 (121-202)||(5912240-5912321)
chr5 (121-202)||(5919175-5919256)
chr5 (121-202)||(35418406-35418487)
chr5 (121-158)||(6750158-6750195)
[»] chr1 (2 HSPs)
chr1 (120-202)||(16861423-16861505)
chr1 (121-202)||(40769299-40769380)
[»] chr7 (2 HSPs)
chr7 (121-201)||(24185320-24185400)
chr7 (117-158)||(47019670-47019711)
[»] chr4 (6 HSPs)
chr4 (121-202)||(235113-235194)
chr4 (121-202)||(39219175-39219256)
chr4 (121-202)||(39225701-39225782)
chr4 (121-202)||(40055776-40055857)
chr4 (121-202)||(40056102-40056183)
chr4 (121-190)||(47114345-47114414)
[»] chr8 (2 HSPs)
chr8 (132-202)||(18308338-18308408)
chr8 (123-200)||(10267226-10267303)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 8529511 - 8529629
Alignment:
Q  117 taaatctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggttaaatcaccttaac 216  Q
    |||||||||||||||||||||||||||||||||||||||||  | ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  8529511 taaatctcatttattaaattatacatatagatgatgcatatggtgatatgatcattgaactaactcaattgagattttgtagtggttaaatcaccttaac 8529610  T
Q  217 ttattatagttttgcaata 235  Q
    |||||||||||||||||||    
T  8529611 ttattatagttttgcaata 8529629  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 10566459 - 10566541
Alignment:
Q  120 atctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    |||||||||||||||||| | |||||||||||||||||| | ||||||||| |||||| |||||| ||||| ||| |||||||    
T  10566459 atctcatttattaaattacatatatagatgatgcatatagtgatatgatcattgaactgactcaactgagaatttctaatggt 10566541  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 10569709 - 10569791
Alignment:
Q  120 atctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    |||||||||||||||||| | |||||||||||||||||| | ||||||||| |||||| |||||| ||||| ||| |||||||    
T  10569709 atctcatttattaaattacatatatagatgatgcatatagtgatatgatcattgaactgactcaactgagaatttctaatggt 10569791  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 8511409 - 8511467
Alignment:
Q  164 atgatcaatgaactaactcaattgagattttgtaatggttaaatcaccttaacttatta 222  Q
    ||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||    
T  8511409 atgatcattgaactaactcaattgagattttgtagtggtcaaatcaacttaacttatta 8511467  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 20282972 - 20283054
Alignment:
Q  120 atctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    |||||||||||||||||| | |||||||| ||||||||| | ||||||||| |||||| |||||| ||||| ||| |||||||    
T  20282972 atctcatttattaaattacatatatagatcatgcatatagtgatatgatcattgaactgactcaactgagaatttctaatggt 20283054  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 29673899 - 29673817
Alignment:
Q  120 atctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    |||||||||||||||||| | ||||| |||||||||||| | ||||||||| |||||| |||||| ||||| ||| |||||||    
T  29673899 atctcatttattaaattacatatataaatgatgcatatagtgatatgatcattgaactgactcaactgagaatttctaatggt 29673817  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 8545689 - 8545770
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    ||||||||||||||||| | |||||||| |||||||||   || |||||| |||||| |||||| ||||| ||| |||||||    
T  8545689 tctcatttattaaattacatatatagattatgcatatagagatgtgatcattgaactgactcaactgagaatttctaatggt 8545770  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 38485311 - 38485393
Alignment:
Q  120 atctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    |||||||||||||||||| | |||||||||||||||||| | ||||||||| |||||| |||||| ||||| ||| |||||||    
T  38485311 atctcatttattaaattacatatatagatgatgcatatagtgatatgatcattgaactgactcaactgagaatttctaatggt 38485393  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 36101421 - 36101340
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    ||||||||||||||||| | ||||||||||||||||||   || |||||| |||||| |||||| ||||| ||| |||||||    
T  36101421 tctcatttattaaattacatatatagatgatgcatatagagatgtgatcattgaactgactcaactgagaatttctaatggt 36101340  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 41195274 - 41195196
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaat 199  Q
    ||||||||||||||||| | |||||||||||||||||| | || |||||| |||||| |||| | ||||| ||| ||||    
T  41195274 tctcatttattaaattacatatatagatgatgcatatagtgatgtgatcattgaactgactcgactgagaatttctaat 41195196  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 5912321 - 5912240
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    ||||||||||||||||| | ||||||||||||||||||   || || ||| |||||| |||||| ||||| ||| |||||||    
T  5912321 tctcatttattaaattacatatatagatgatgcatatagagatgtggtcattgaactgactcaactgagaatttctaatggt 5912240  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 5919256 - 5919175
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    ||||||||||||||||| | ||||||||||||||||||   || || ||| |||||| |||||| ||||| ||| |||||||    
T  5919256 tctcatttattaaattacatatatagatgatgcatatagagatgtggtcattgaactgactcaactgagaatttctaatggt 5919175  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 35418487 - 35418406
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    ||||||||||||||||| | ||||||||||||||||||   || || ||| |||||| |||||| ||||| ||| |||||||    
T  35418487 tctcatttattaaattacatatatagatgatgcatatagagatgtggtcattgaactgactcaactgagaatttctaatggt 35418406  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 6750158 - 6750195
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatata 158  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  6750158 tctcatttattaaattacatatatagatgatgcatata 6750195  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 16861505 - 16861423
Alignment:
Q  120 atctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    |||||||||||||||||| | |||||||||||||||||| | ||||||||| |||||| |||||| ||||| ||| |||||||    
T  16861505 atctcatttattaaattacatatatagatgatgcatatagtgatatgatcattgaactgactcaactgagaatttctaatggt 16861423  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 40769299 - 40769380
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    ||||||||||||||||| | |||||||||||||||||| |||| |||||| |||| | |||| | ||||| ||| |||||||    
T  40769299 tctcatttattaaattacatatatagatgatgcatatagtaatgtgatcattgaagtgactcgactgagaatttctaatggt 40769380  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 24185320 - 24185400
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatgg 201  Q
    |||||||||||||| || | |||||||||||||||||| | || |||||||||||||||||||| ||||| ||| ||||||    
T  24185320 tctcatttattaaactacatatatagatgatgcatatagtgatgtgatcaatgaactaactcaagtgagaatttctaatgg 24185400  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 47019711 - 47019670
Alignment:
Q  117 taaatctcatttattaaattatacatatagatgatgcatata 158  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  47019711 taaatctcatttattaaattacatatatagatgatgcatata 47019670  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 235113 - 235194
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    ||||||||||||||||| | ||||||||||||||||||   || |||||| | |||| |||||||||||| ||| |||||||    
T  235113 tctcatttattaaattacatatatagatgatgcatatagagatgtgatcattaaactgactcaattgagaatttctaatggt 235194  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 39219175 - 39219256
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    ||||||||||||||||| | ||||||||||||||||||   || |||||| |||||| |||||| ||||| ||| |||||||    
T  39219175 tctcatttattaaattacatatatagatgatgcatatagagatgtgatcattgaactgactcaactgagaatttctaatggt 39219256  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 39225701 - 39225782
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    ||||||||||||||||| | ||||||||||||||||||   || |||||| |||||| |||||| ||||| ||| |||||||    
T  39225701 tctcatttattaaattacatatatagatgatgcatatagagatgtgatcattgaactgactcaactgagaatttctaatggt 39225782  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 40055776 - 40055857
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    ||||||||||||||||| | ||||||||||||||||||   || |||||| |||||| |||||| ||||| ||| |||||||    
T  40055776 tctcatttattaaattacatatatagatgatgcatatagagatgtgatcattgaactgactcaactgagaatttataatggt 40055857  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 40056183 - 40056102
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    ||||||||||||||||| | ||||||||||||||||||   || |||||| |||||| |||||| ||||| ||| |||||||    
T  40056183 tctcatttattaaattacatatatagatgatgcatatagagatgtgatcattgaactgactcaactgagaatttctaatggt 40056102  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 47114414 - 47114345
Alignment:
Q  121 tctcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgaga 190  Q
    ||||||||||||||||| | ||||||||||||||||||   || |||||| |||||| |||||| |||||    
T  47114414 tctcatttattaaattacatatatagatgatgcatatagagatgtgatcattgaactgactcaactgaga 47114345  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 18308338 - 18308408
Alignment:
Q  132 aaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatggt 202  Q
    |||||| | |||||||||||||||||| | ||||||||| |||| | |||||| ||||| ||| |||||||    
T  18308338 aaattacatatatagatgatgcatatagtgatatgatcattgaagtgactcaactgagaatttctaatggt 18308408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 10267226 - 10267303
Alignment:
Q  123 tcatttattaaattatacatatagatgatgcatatattaatatgatcaatgaactaactcaattgagattttgtaatg 200  Q
    ||||||||||||||| | |||||||||||||||||| | ||||| | | |||||| |||||  ||||| ||| |||||    
T  10267226 tcatttattaaattacatatatagatgatgcatatagtgatatggttattgaactgactcacctgagaatttctaatg 10267303  T

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