View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8498_low_23 (Length: 252)
Name: NF8498_low_23
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 46356133 - 46356374
Alignment:
| Q |
1 |
caaatttcaaagtctatattccctccctttcttttttattttaagcaaatactattagaaagaatatgataccctctttcttatactttttctcatagat |
100 |
Q |
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| T |
46356133 |
caaatttcaaagtctatattccctccctttcttttttattttaagcaaatactattagaaagaatatgataccctctttcttatactttttctcatagat |
46356232 |
T |
|
| Q |
101 |
atggttaaaaaagagtcttctaattcactgattgagattcgagcttttcaggataatggggtaccattcacacccactgatatcgttatatagtactata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46356233 |
atggttaaaaaagagtcttctaattcactgattgagattcgagcttttcagggtaatggggtaccattcacacccactgatatcgttatatagtactata |
46356332 |
T |
|
| Q |
201 |
atttacacctttgtttctcttgattttcgttatctctgctac |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46356333 |
atttacacctttgtttctcttgattttcgttatctttgctac |
46356374 |
T |
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