View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8498_low_26 (Length: 222)
Name: NF8498_low_26
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 44629282 - 44629102
Alignment:
| Q |
24 |
aaagggtggaacatagctatcagaaatcaatacaggcacacattctgcaaatatagcttccactattcttggacttgctacttcataaccacttggacac |
123 |
Q |
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| T |
44629282 |
aaagggtggaacatagctatcagaaatcaatacaggcacacattctgcaaatatagcttccactattcttggacttgctacttcataaccacttggacac |
44629183 |
T |
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| Q |
124 |
aaacaaaacttgctgcttctaagctttgtgtggtaagaatcttcatcagggagttcttcatagacttgcacatcttggtct |
204 |
Q |
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| T |
44629182 |
aaacaaaacttgctgcttctaagctttgtgtggtaagaatcttcatcagggagttcttcatagacttgcacatcttggtct |
44629102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 49302353 - 49302273
Alignment:
| Q |
55 |
acaggcacacattctgcaaatatagcttccactattcttggacttgctacttcataaccacttggacacaaacaaaacttg |
135 |
Q |
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| T |
49302353 |
acaggcacacattctgcataaattgattccacaattcttgggctagccacttcaaaaccacttggacaaagacagaacttg |
49302273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 47727967 - 47728019
Alignment:
| Q |
79 |
gcttccactattcttggacttgctacttcataaccacttggacacaaacaaaa |
131 |
Q |
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| T |
47727967 |
gcttccacaattcttggactagccacttcatatccacttggacacaaacaaaa |
47728019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 47725777 - 47725853
Alignment:
| Q |
61 |
acacattctgcaaatatagcttccactattcttggacttgctacttcataaccacttggacacaaacaaaacttgct |
137 |
Q |
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| T |
47725777 |
acacatcctgcataaattgcttccaccactcttggacttgccacttcatgtccactagggcacaaacaaaacttgct |
47725853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 47705267 - 47705304
Alignment:
| Q |
100 |
gctacttcataaccacttggacacaaacaaaacttgct |
137 |
Q |
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| T |
47705267 |
gctacttcatagccacttggacacaagcaaaacttgct |
47705304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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