View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8498_low_3 (Length: 597)
Name: NF8498_low_3
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 544; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Original strand, 1481691 - 1482261
Alignment:
| Q |
18 |
ccatgtttatggctacagtttcagtagtgatacggaggttgttaaatacgttactgtcttggctcttctggtttctatatctgttatactcgatagcata |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481691 |
ccatgtttatggctacattttcagtagtgatacggaggttgttaaatacgttactgtcttggctcttctggtttctatatctgttatactcgatagcata |
1481790 |
T |
|
| Q |
118 |
caaggcgttttcacaggtaaattgctcagtatacaaggtttctacgtcgtttgtagtgactcaacatgatgactaaagataatctgttaaaattagttga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481791 |
caaggcgttttcacaggtaaattgctcagtatacaaggtttctacgtagtttgtagtgactcaacatgatgactaaagataatctgttaaaattagttga |
1481890 |
T |
|
| Q |
218 |
atattgtttaagatagttacaagttagttacattgtgatctaactaaactaactaatcttattcacaaatctaaattctatcacaataagacaaacattg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481891 |
atattgtttaagatagttacaagttagttacattgtgatctaactaaactaactaatcgtattcacaaatctaaattctatcacaataagacaaacattg |
1481990 |
T |
|
| Q |
318 |
tctaaatttgttttacaagttagttacattatgaattaagttattgttgttaatattctgttgttttgttgatttgttatgtgatgatgagtgtttatat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481991 |
tctaaatttgttttacaagttagttacattatgaattaagttattgttgttaatattctgttgttttgttgatttgttatgtgatgatgagtgtttata- |
1482089 |
T |
|
| Q |
418 |
tttagttctatctgattagtttgaatttgaattaatttagtgttgttaatattgtgtttaggtgattgagagaaggagggagagactgggaactgtggag |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1482090 |
tttagttctatctgattagtttgaatttgaattaatttagtgttgttaatattgtgtttaggcgattgagagaaggagggagagactgggaactgaggag |
1482189 |
T |
|
| Q |
518 |
attgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482190 |
attgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
1482261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 418 - 589
Target Start/End: Original strand, 36716878 - 36717049
Alignment:
| Q |
418 |
tttagttctatctgattagtttgaatttgaattaatttagtgttgttaatattgtgtttaggtgattgagagaaggagggagagactgggaactgtggag |
517 |
Q |
| |
|
|||||||| |||| |||| ||||||| |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
36716878 |
tttagttccatcttattaatttgaatatgaactaaattagtgttgttaatattgtgtttaggcgattgagagaaggagggagagacagggaactgaggaa |
36716977 |
T |
|
| Q |
518 |
attgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36716978 |
attgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
36717049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 34728641 - 34728685
Alignment:
| Q |
202 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
247 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
34728641 |
tgttagaattagttgaatattgtttaag-tagttacatgttagtta |
34728685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 34893626 - 34893594
Alignment:
| Q |
214 |
ttgaatattgtttaagatagttacaagttagtt |
246 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
34893626 |
ttgaatattgtttaagatagttacaagctagtt |
34893594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 5e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 49191021 - 49191238
Alignment:
| Q |
18 |
ccatgtttatggctacagtttcagtagtgatacggaggttgttaaatacgttactgtcttggctcttctggtttctatatctgttatactcgatagcata |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| |||||| |
|
|
| T |
49191021 |
ccatgtttatggctacattttcagtagtgatacagaagttgttaaatacgtcactgtcttggctcctctggtttctatatccgttatactcgacagcata |
49191120 |
T |
|
| Q |
118 |
caaggcgttttcacaggtaaattgctcagtatacaaggtttctacgtcgtttgtagtgactcaacatgatgactaaagataatctgttaaaattagttga |
217 |
Q |
| |
|
||||||||| || |||||||||||||| |||| ||||||||||| || |||||||||||||||||||||| |||||||||||| || || |||||||||| |
|
|
| T |
49191121 |
caaggcgttctcgcaggtaaattgctccgtatgcaaggtttctatgttgtttgtagtgactcaacatgatcactaaagataatatgctagaattagttga |
49191220 |
T |
|
| Q |
218 |
atattgtttaagatagtt |
235 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
49191221 |
atattgtttaagatagtt |
49191238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 279 - 330
Target Start/End: Original strand, 49191237 - 49191288
Alignment:
| Q |
279 |
ttcacaaatctaaattctatcacaataagacaaacattgtctaaatttgttt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
49191237 |
ttcacaaatctaaattctatcacaataagacaaacattctctaagtttgttt |
49191288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 2622028 - 2622073
Alignment:
| Q |
202 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
247 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
2622028 |
tgttagaattagttgaatattgtttaaggtagttacgagttagtta |
2622073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 4573181 - 4573136
Alignment:
| Q |
202 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
247 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
4573181 |
tgttgaaattagtttagtattgtttaagatagttataagttagtta |
4573136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 37214237 - 37214282
Alignment:
| Q |
202 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
247 |
Q |
| |
|
||||| ||||||||| |||||||||||| |||||| |||||||||| |
|
|
| T |
37214237 |
tgttagaattagttggatattgtttaaggtagttaaaagttagtta |
37214282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 41356623 - 41356668
Alignment:
| Q |
202 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
247 |
Q |
| |
|
||||| |||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
41356623 |
tgttagaattcgttgaatattgtttaagttcgttacaagttagtta |
41356668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University