View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8498_low_5 (Length: 473)

Name: NF8498_low_5
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8498_low_5
NF8498_low_5
[»] chr4 (3 HSPs)
chr4 (1-328)||(16865563-16865890)
chr4 (348-448)||(16865401-16865505)
chr4 (241-307)||(5877096-5877162)
[»] chr8 (5 HSPs)
chr8 (40-325)||(40610514-40610800)
chr8 (352-448)||(40610865-40610961)
chr8 (48-128)||(2083203-2083283)
chr8 (1-38)||(40610460-40610497)
chr8 (243-307)||(7849839-7849903)
[»] chr6 (2 HSPs)
chr6 (40-322)||(5144754-5145037)
chr6 (346-446)||(5145099-5145199)
[»] chr3 (3 HSPs)
chr3 (40-323)||(20544523-20544807)
chr3 (348-448)||(20544360-20544460)
chr3 (1-38)||(20544824-20544861)
[»] chr5 (2 HSPs)
chr5 (48-328)||(20531210-20531491)
chr5 (49-109)||(14178179-14178239)
[»] chr1 (1 HSPs)
chr1 (39-321)||(47143841-47144122)
[»] chr7 (3 HSPs)
chr7 (48-329)||(3012938-3013220)
chr7 (243-307)||(46431583-46431647)
chr7 (241-307)||(11850400-11850466)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 16865890 - 16865563
Alignment:
Q  1 ccaaacctctctaagatttcagtagagtatttgcattgttcatcacactgcttaacttatactccaagaaaatatctcattttccgtaaatcagtcatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  16865890 ccaaacctctctaagatttcagtagagtatttgcattgttcatcacactgcttaacttatactccaagaaaatatctcattttccctaaatcaatcatag 16865791  T
Q  101 caaaatttctttgcattgaatgtttgaatgatctaaacaactcaatgtcatctccagtgtagataaggtaatccacatataagctaactataagcatcct 200  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  16865790 caaaatttctttgcattgaatgtttgaatgatccaaacatctcaatttcatctccagtgtagataaggtcatccacatataagctaactatatgcatcct 16865691  T
Q  201 tccatcagagttgttcttcacaaataaggtatgttcatagaacatttctcaaaattttcttgaccaaagtaagattctattttgctataccatgctctag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16865690 tccatcagagttgttcttcacaaataaggtatgttcatagaacatttctcaaaattttcttgaccaaagtaagattctattttgctataccatgctttag 16865591  T
Q  301 gtgcctgacttaatccatacaaagcttt 328  Q
    |||||||||||||| |||||||||||||    
T  16865590 gtgcctgacttaatacatacaaagcttt 16865563  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 348 - 448
Target Start/End: Complemental strand, 16865505 - 16865401
Alignment:
Q  348 atacacatcttcaattaactcaccatgcataaaatcactcttaacatcaagatgataaactttccatcctttacaagctgc----aactggtagaattgt 443  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    |||||||||||||||    
T  16865505 atacacatattcaattaactcaccatgcataaaatcactcttaacatcaagatgataaactttccatcctttacaagttgcaactaactggtagaattgt 16865406  T
Q  444 tctga 448  Q
    |||||    
T  16865405 tctga 16865401  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 5877162 - 5877096
Alignment:
Q  241 aacatttctcaaaattttcttgaccaaagtaagattctattttgctataccatgctctaggtgcctg 307  Q
    ||||||| ||||||  |||| || ||||||| | |||||| ||||||||||||||||| ||||||||    
T  5877162 aacatttttcaaaaccttctcgaacaaagtatgcttctatcttgctataccatgctcttggtgcctg 5877096  T

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Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 40 - 325
Target Start/End: Original strand, 40610514 - 40610800
Alignment:
Q  40 tcatcacactgcttaacttatactccaagaaaatatctcattttccgtaaatcagtcatagcaaaatttctttgcattgaatgtttgaatgatctaaaca 139  Q
    |||||||||||||| |||| |||| ||||||| ||||||||||| |  ||||| ||||||||||||||  | | ||||||||||||||||||| ||||||    
T  40610514 tcatcacactgctttacttctacttcaagaaagtatctcatttttcccaaatctgtcatagcaaaattcttctacattgaatgtttgaatgatttaaaca 40610613  T
Q  140 actcaatgtcatctccagtgtagataaggtaatccacatataagctaactataagcatccttccatcagagttgttcttcacaaataaggtatgttcat- 238  Q
     |||||||||||||||| ||||||| || | ||| | ||| |||||||||||||| || |||||||||||||| || ||||||||||| ||||||||||     
T  40610614 tctcaatgtcatctccattgtagattagatcatctatatacaagctaactataagtattcttccatcagagttatttttcacaaataaagtatgttcatg 40610713  T
Q  239 agaacatttctcaaaattttcttgaccaaagtaagattctattttgctataccatgctctaggtgcctgacttaatccatacaaagc 325  Q
     ||| |||||||||||||||||||| ||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||    
T  40610714 tgaatatttctcaaaattttcttgagcaaagtaggattctattttactgtaccatgctctaggtgcctgtcttaatccatacaaagc 40610800  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 352 - 448
Target Start/End: Original strand, 40610865 - 40610961
Alignment:
Q  352 acatcttcaattaactcaccatgcataaaatcactcttaacatcaagatgataaactttccatcctttacaagctgcaactggtagaattgttctga 448  Q
    ||||||||||||||||| ||||||| |||| ||||||| |||||||| ||||| |||||||||||||| ||||||||||||| |||||  |||||||    
T  40610865 acatcttcaattaactctccatgcagaaaagcactcttgacatcaagctgatacactttccatcctttgcaagctgcaactgctagaagagttctga 40610961  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 2083283 - 2083203
Alignment:
Q  48 ctgcttaacttatactccaagaaaatatctcattttccgtaaatcagtcatagcaaaatttctttgcattgaatgtttgaa 128  Q
    ||||||||||| |||||||||||| || |||||||| | || |||||||||| |||| |||||||||||||| ||||||||    
T  2083283 ctgcttaacttctactccaagaaagtacctcatttttcctagatcagtcataacaaactttctttgcattgattgtttgaa 2083203  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40610460 - 40610497
Alignment:
Q  1 ccaaacctctctaagatttcagtagagtatttgcattg 38  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  40610460 ccaaacctttctaagatttcagtagagtatttacattg 40610497  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 7849839 - 7849903
Alignment:
Q  243 catttctcaaaattttcttgaccaaagtaagattctattttgctataccatgctctaggtgcctg 307  Q
    ||||| |||||||||||||  |  || |||| ||||||||| |||||||| ||||||||||||||    
T  7849839 catttttcaaaattttctttgcagaaataagcttctattttactataccaggctctaggtgcctg 7849903  T

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Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 40 - 322
Target Start/End: Original strand, 5144754 - 5145037
Alignment:
Q  40 tcatcacactgcttaacttatactccaagaaaatatctcattttccgtaaatcagtcatagcaaaatttctttgcattgaatgtttgaatgatctaaaca 139  Q
    |||||| ||| ||||||||||||||||||||| || |||||||| |  | ||||||||||| |||||| ||||||||||||| |||||||||   |||||    
T  5144754 tcatcatactacttaacttatactccaagaaagtacctcatttttcccatatcagtcatagaaaaattcctttgcattgaatttttgaatgactcaaaca 5144853  T
Q  140 actcaatgtcatctccagtgtagataaggtaatccacatataagctaactataagcatccttccatcagagttgttcttcacaaataaggtatgttcat- 238  Q
       |||||||||||| |||||| || || | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||     
T  5144854 ttgcaatgtcatctctagtgtaaatgagatcatccacatataagctaactataagcattcttccttcagagttgttcttcacaaataaagtatgttcatg 5144953  T
Q  239 agaacatttctcaaaattttcttgaccaaagtaagattctattttgctataccatgctctaggtgcctgacttaatccatacaa 322  Q
    |||||||||| |||| ||||||| | |||| ||||||||||||||||||||||||||| ||||||||||  || ||||||||||    
T  5144954 agaacatttcacaaagttttcttaagcaaaataagattctattttgctataccatgctttaggtgcctgttttcatccatacaa 5145037  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 446
Target Start/End: Original strand, 5145099 - 5145199
Alignment:
Q  346 agatacacatcttcaattaactcaccatgcataaaatcactcttaacatcaagatgataaactttccatcctttacaagctgcaactggtagaattgttc 445  Q
    ||||| ||| ||||||||| ||||||||| | ||| ||| | ||||||||||| |||||||| ||||| |||||||| ||||||| || || ||||||||    
T  5145099 agatatacaacttcaattagctcaccatgaagaaactcatttttaacatcaagctgataaaccttccaacctttacatgctgcaattgctaaaattgttc 5145198  T
Q  446 t 446  Q
    |    
T  5145199 t 5145199  T

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Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 40 - 323
Target Start/End: Complemental strand, 20544807 - 20544523
Alignment:
Q  40 tcatcacactgcttaacttatactccaagaaaatatctcattttccgtaaatcagtcatagcaaaatttctttgcattgaatgtttgaatgatctaaaca 139  Q
    |||||||||| ||| |||| ||||||||  || ||||||||||| |  ||||||||||||||||||||  |||  ||||| ||||||||||||  |||||    
T  20544807 tcatcacactactttacttctactccaaagaagtatctcatttttcccaaatcagtcatagcaaaattcttttaaattgagtgtttgaatgattcaaaca 20544708  T
Q  140 actcaatgtcatctccagtgtagataaggtaatccacatataagctaactataagcatccttccatcagagttgttcttcacaaataaggtatgttcat- 238  Q
     || ||||||||||||||||||||| || | ||| ||||| |||||||||||||| || |||||||||||| |||| ||||||||||| ||||||||||     
T  20544707 tctaaatgtcatctccagtgtagattagatcatctacatacaagctaactataagtattcttccatcagagatgtttttcacaaataaagtatgttcatg 20544608  T
Q  239 agaacatttctcaaaattttcttgaccaaagtaagattctattttgctataccatgctctaggtgcctgacttaatccatacaaa 323  Q
     |||||||||||||||||||||||| ||||||| |||| |||||| |||||||||||||| |||||||| |||||||||||||||    
T  20544607 tgaacatttctcaaaattttcttgagcaaagtaggattttattttactataccatgctcttggtgcctgtcttaatccatacaaa 20544523  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 348 - 448
Target Start/End: Complemental strand, 20544460 - 20544360
Alignment:
Q  348 atacacatcttcaattaactcaccatgcataaaatcactcttaacatcaagatgataaactttccatcctttacaagctgcaactggtagaattgttctg 447  Q
    ||||||||||||||||||||| ||||||| |||| ||||||| |||||||| ||||| || ||||| ||||| |||||||||| || |||||  ||||||    
T  20544460 atacacatcttcaattaactctccatgcagaaaagcactcttgacatcaagctgatacacgttccaacctttgcaagctgcaattgctagaagagttctg 20544361  T
Q  448 a 448  Q
    |    
T  20544360 a 20544360  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20544861 - 20544824
Alignment:
Q  1 ccaaacctctctaagatttcagtagagtatttgcattg 38  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  20544861 ccaaacctctctaagatttcagaagagtatttacattg 20544824  T

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Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 48 - 328
Target Start/End: Complemental strand, 20531491 - 20531210
Alignment:
Q  48 ctgcttaacttatactccaagaaaatatctcattttccgtaaatcagtcatagcaaaatttctttgcattgaatgtttgaatgatctaaacaactcaatg 147  Q
    ||||||||||| ||||||||| || || |||||| | | || || |||||||||||| ||  |||||||||| ||||||||||||  |||||   |||||    
T  20531491 ctgcttaacttttactccaaggaagtacctcattcttcctagattagtcatagcaaatttcttttgcattgattgtttgaatgattcaaacacaacaatg 20531392  T
Q  148 tcatctccagtgtagataaggtaatccacatataagctaactataagcatccttccatcagagttgttcttcacaaataaggtatgttcat-agaacatt 246  Q
    |||||||||||||| || || | ||||||||| | ||||||||| |||||| |||||| |||||||||||||| ||| || |||||||||| ||| ||||    
T  20531391 tcatctccagtgtatattagatcatccacatacaggctaactattagcatctttccattagagttgttcttcagaaagaaagtatgttcatgagagcatt 20531292  T
Q  247 tctcaaaattttcttgaccaaagtaagattctattttgctataccatgctctaggtgcctgacttaatccatacaaagcttt 328  Q
    ||  ||||||||||||| |||||||||||| ||| |||||||||||||||||| || |||| |||||||||||||| |||||    
T  20531291 tcataaaattttcttgagcaaagtaagattttatcttgctataccatgctctaagttcctgtcttaatccatacaaggcttt 20531210  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 14178239 - 14178179
Alignment:
Q  49 tgcttaacttatactccaagaaaatatctcattttccgtaaatcagtcatagcaaaatttc 109  Q
    |||||||||| ||||||||||||||||||||| || |  ||||| ||||||||||| ||||    
T  14178239 tgcttaacttctactccaagaaaatatctcatatttcccaaatctgtcatagcaaactttc 14178179  T

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Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 39 - 321
Target Start/End: Complemental strand, 47144122 - 47143841
Alignment:
Q  39 ttcatcacactgcttaacttatactccaagaaaatatctcattttccgtaaatcagtcatagcaaaatttctttgcattgaatgtttgaatgatctaaac 138  Q
    ||||| ||| || ||||||| |||||||||||| |||||| |||| | |||||||||||| ||||| |||||||||||||| ||||| |||||  |||||    
T  47144122 ttcattacattgtttaacttctactccaagaaagtatctcctttttcctaaatcagtcatggcaaagtttctttgcattgagtgtttaaatgaattaaac 47144023  T
Q  139 aactcaatgtcatctccagtgtagataaggtaatccacatataagctaactataagcatccttccatcagagttgttcttcacaaataaggtatgttcat 238  Q
    | ||||   |||||||||||||||||||| | ||| |||||||| ||||||||||||||  | || ||  |||| |||||||||||||  || |||||||    
T  47144022 atctcagaatcatctccagtgtagataagttcatcaacatataaactaactataagcattgtaccttc--agttattcttcacaaatagagtgtgttcat 47143925  T
Q  239 -agaacatttctcaaaattttcttgaccaaagtaagattctattttgctataccatgctctaggtgcctgacttaatccataca 321  Q
     ||| ||||||||||| ||||| ||| ||||||||| || |||  ||||||||||||||||||||||||| |||||||||||||    
T  47143924 gagagcatttctcaaagttttcctgaacaaagtaagcttatatcctgctataccatgctctaggtgcctgtcttaatccataca 47143841  T

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Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 48 - 329
Target Start/End: Original strand, 3012938 - 3013220
Alignment:
Q  48 ctgcttaacttatactccaagaaaatatctcattttccgtaaatcagtcatagcaaaatttctttgcattgaatgtttgaatgatctaaacaactcaatg 147  Q
    ||||| ||||| ||||||||| || || |||||  | | || || |||||||||||| |||||||||||||| ||| |||| |||  |||||   |||      
T  3012938 ctgctcaacttctactccaaggaagtacctcatccttcctagataagtcatagcaaattttctttgcattgattgtgtgaaggattcaaacatagcaaca 3013037  T
Q  148 tcatctccagtgtagataaggtaatccacatataagctaactataagcatccttccatcagagttgttcttcacaaataaggtatgttcat-agaacatt 246  Q
    |||||||| ||||| ||||| | |||||||   | ||||||||| |||||  | || |||||||| ||||||||||| ||||||||||||| ||| ||||    
T  3013038 tcatctcctgtgtatataagatcatccacaatcaggctaactattagcattttcccttcagagttattcttcacaaacaaggtatgttcatgagagcatt 3013137  T
Q  247 tctcaaaattttcttgaccaaagtaagattctattttgctataccatgctctaggtgcctgacttaatccatacaaagctttt 329  Q
    ||   |||||||||||| |||||||||||||||| || ||||||||  ||||||||||||| |||||||||||||||||||||    
T  3013138 tcatgaaattttcttgagcaaagtaagattctatcttactataccacactctaggtgcctgtcttaatccatacaaagctttt 3013220  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 46431583 - 46431647
Alignment:
Q  243 catttctcaaaattttcttgaccaaagtaagattctattttgctataccatgctctaggtgcctg 307  Q
    |||||||||||||| ||||  |  ||||||| ||||||||| |||||||||||||| ||||||||    
T  46431583 catttctcaaaattctctttgcagaagtaagcttctattttactataccatgctcttggtgcctg 46431647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 11850466 - 11850400
Alignment:
Q  241 aacatttctcaaaattttcttgaccaaagtaagattctattttgctataccatgctctaggtgcctg 307  Q
    ||||||| ||||||  |||| || ||||||| | |||||| ||||||||||||||||| ||||||||    
T  11850466 aacatttttcaaaaccttctcgaacaaagtatgcttctatcttgctataccatgctcttggtgcctg 11850400  T

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