View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8498_low_6 (Length: 455)
Name: NF8498_low_6
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 165 - 434
Target Start/End: Original strand, 20416066 - 20416339
Alignment:
| Q |
165 |
taggtagctattaaaccatgtgt-gtaccatttcaaacttctgtgtttgaaaagcaggcctatcattagaaagttgtgtacaatatttttcttcaat--- |
260 |
Q |
| |
|
|||||||| ||||||| || ||| |||||||||||||| ||| ||||||||||| | |||||||||| | ||||||||||||||||||| | | |
|
|
| T |
20416066 |
taggtagccattaaacaatatgttgtaccatttcaaacctct----ttgaaaagcagacacatcattagaaggctgtgtacaatatttttcttgattatt |
20416161 |
T |
|
| Q |
261 |
---tattacaattaaaa-atgggacattcatcgccagtcgaaactagtttaacatcggagtccaataagaattgagaatttggcgattattttaaaaata |
356 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20416162 |
agttattacaattaaaaaatgggacattcatcgtcagtggaaactagtttaacatcggagtccaataagaattgagaatttggcgattattttaaaaata |
20416261 |
T |
|
| Q |
357 |
tggttgcaatatatggttaaataaatggcaatatgatagattctttttggatgacggtgtaaaactattgtatattgc |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20416262 |
tggttgcaatatatggttaaataaatggcaatatgatagattctttttggatgacggtgtaaaactattgtatattgc |
20416339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 20458559 - 20458627
Alignment:
| Q |
8 |
gagcagaggaagctcaatgatataaaaaacaaattgtggtctaaaatgatcatatgtcgaatttagaga |
76 |
Q |
| |
|
||||||||||||||| | |||| ||| |||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
20458559 |
gagcagaggaagctccaccatatccgaaataaattgaggtctaaaattatcatatgtcgaatttagaga |
20458627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 370
Target Start/End: Complemental strand, 31339691 - 31339640
Alignment:
| Q |
319 |
caataagaattgagaatttggcgattattttaaaaatatggttgcaatatat |
370 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| | |||| |||||||| |
|
|
| T |
31339691 |
caataagaattgagaatttggcggttatttttaaaaaacggtttcaatatat |
31339640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University