View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8498_low_7 (Length: 429)
Name: NF8498_low_7
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 16329331 - 16328929
Alignment:
| Q |
18 |
aacaaaatcgtccttttatggcattatctattgtctcagacattctatccaatatagagaatgcttcttacatttattctttgactgaaaaatgtggaat |
117 |
Q |
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| T |
16329331 |
aacaaagtcgtccttttatggcattatctgttgtctcagacattctgtccaatatagagaatgcttcttacatttattctttgactaaaaaatgtggaat |
16329232 |
T |
|
| Q |
118 |
ttgactatgtcgtgctaacaaaacgtttcaatttactttctaggttttgtgggataactgctcctgcaaatttcggttttatgatgcaatcacattatta |
217 |
Q |
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| T |
16329231 |
ttgactatgtcgtgctaacaaaacgtttcaatttactttctaggttttgtgggatacctgctcctgcaaatttcggttttatgatacaatcacattatta |
16329132 |
T |
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| Q |
218 |
ttttctttcagcgaagtttatttatgagtcttatttactcnnnnnnnnctccaccttcgaaagtttcttcttttctgaatttatgagaagagttgggttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16329131 |
ttttctttcagcgaagtttatttatgagtcttatttactc-attttttctccaccttcgaaagtttcttcttttctgaatttatgagaagagttgggttg |
16329033 |
T |
|
| Q |
318 |
ctaaattctcatgacggtgttctatgtcgtcaaccattcatacttttcttattatccgatcatggtgattagaagagtatggttgttgacggttgatctc |
417 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| ||||| |
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| T |
16329032 |
ctaaattctcatgacggtgttgtatgtcgtcaaccattcatacttttcttattatctgctcatggtggttagaagagtatggttgttgacggtggatctt |
16328933 |
T |
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| Q |
418 |
tgct |
421 |
Q |
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|||| |
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| T |
16328932 |
tgct |
16328929 |
T |
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