View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8498_low_8 (Length: 426)
Name: NF8498_low_8
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8498_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 15 - 411
Target Start/End: Original strand, 5979221 - 5979613
Alignment:
| Q |
15 |
gacatcattcgacacaaatggtgacggtcgcatcagcaaaggtgaactgcgtgaggcaatgagaatcaccagtggcctttttgcttcatggaagagcaat |
114 |
Q |
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| T |
5979221 |
gacatcattcgacacaaatggtgacggtcgcatcagcaaaggtgaactgcgtgaggcaatgagaatcaccagtggcctttttgcttcatggaagagcaat |
5979320 |
T |
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| Q |
115 |
aaggtcttgaagtccgttgattcaaaccatgatggtttcattgatgataaagaatttattaatcttgcacgatttgcagagaagcacttgaacataagag |
214 |
Q |
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| T |
5979321 |
aaggtcttgaagtccgttgattcaaaccatgatggtttcattgatgataaagaatttattaatcttgcacgatttgcagagaagcacttgaacataagag |
5979420 |
T |
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| Q |
215 |
tcacaaagtagttttttcctcaagaatttaattcttattgtgattactgcaagttttgattcattgtaaatgtctttaattttttgtacttaataatata |
314 |
Q |
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| T |
5979421 |
tcacaaagtagttttttcctcaagaatttaattcttattgtgattactacaagttttgattcattgtaaatgtctttaattttttgtacttaataatata |
5979520 |
T |
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| Q |
315 |
ctaattaaattatcagctatgctagtatgatatatctgaatagtctcctcacaaatttcacgagtttcccaatgcaccactctttcatagaatgtga |
411 |
Q |
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| T |
5979521 |
ctaattaaattatcagctatgctagtatg----atctgaatagtctcctcacaaatttcacgagtttcccaatgcaccactctttcatagaatgtga |
5979613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 5982993 - 5983199
Alignment:
| Q |
15 |
gacatcattcgacacaaatggtgacggtcgcatcagcaaaggtgaactgcgtgaggcaatgagaatcaccagtggcctttttgcttcatggaagagcaat |
114 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||| ||||| |||| ||||||||||| ||||||| |||||||| |||||||| || |
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| T |
5982993 |
gacatcattcgacacaaatggtgacggtcgaatcagcaaagatgagctgcgcgaggtgttgagaatcaccggtggcctctttgcttcgtggaagagtaac |
5983092 |
T |
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| Q |
115 |
aaggtcttgaagtccgttgattcaaaccatgatggtttcattgatgataaagaatttattaatcttgcacgatttgcagagaagcacttgaacataagag |
214 |
Q |
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||||||||||| || || ||| | ||||| || |||||||||||||||||||| || ||||| ||||| | ||||||||||||||||||||||||||| |
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| T |
5983093 |
aaggtcttgaaatctgtcgatgccaaccacgacggtttcattgatgataaagagttcattaaccttgcgcactttgcagagaagcacttgaacataagaa |
5983192 |
T |
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| Q |
215 |
tcacaaa |
221 |
Q |
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||||||| |
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| T |
5983193 |
tcacaaa |
5983199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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