View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8498_low_9 (Length: 423)

Name: NF8498_low_9
Description: NF8498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8498_low_9
NF8498_low_9
[»] chr1 (7 HSPs)
chr1 (14-223)||(51385476-51385685)
chr1 (291-416)||(51385753-51385878)
chr1 (130-203)||(27841257-27841330)
chr1 (28-114)||(14185531-14185617)
chr1 (150-211)||(31769941-31770002)
chr1 (153-211)||(7607384-7607442)
chr1 (153-211)||(14185453-14185511)
[»] chr7 (1 HSPs)
chr7 (291-396)||(11636957-11637060)
[»] chr8 (1 HSPs)
chr8 (130-203)||(16360448-16360521)
[»] chr4 (1 HSPs)
chr4 (153-198)||(41811024-41811069)
[»] chr6 (1 HSPs)
chr6 (15-114)||(32445311-32445407)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 51385476 - 51385685
Alignment:
Q  14 atttgaaacctgttgaagatgataaacagacaaagaataaactaatgcaaataaatgtttacaatagcattctttaaaaataatcacaacatgtataggt 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51385476 atttgaaacctgttgaagatgataaacagacaaacaataaactaatgcaaattaatgtttacaatagcattctttaaaaataatcacaacatgtataggt 51385575  T
Q  114 acttcaatnnnnnnnttaaggatcaaagaacacattaccatgagctgtgacatatctcaaatccaatttggccagatgaatttaaccattcttctccaca 213  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51385576 acttcaataaaaaaattaaggatcaaagaacacattaccatgagctgtgacatatctcaaatccaatttggccagatgaatttaaccattcttctccaca 51385675  T
Q  214 cctatatatg 223  Q
    ||||||||||    
T  51385676 cctatatatg 51385685  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 291 - 416
Target Start/End: Original strand, 51385753 - 51385878
Alignment:
Q  291 gaaccaaacccacaataaatctatatatgaacaacaattaccttgatttctgcaagtaacatacaaagataccaaaagcctccttacaatcagaaacatt 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  51385753 gaaccaaacccacaataaatctatatatgaacaacaattaccttgatttctgcaagtaacatacaaagataccaaaagcctcctcacaatcagaaacatt 51385852  T
Q  391 caacctactgtctagtgtctctgctt 416  Q
    |||||||||| | |||| ||||||||    
T  51385853 caacctactgcccagtgcctctgctt 51385878  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 27841257 - 27841330
Alignment:
Q  130 taaggatcaaagaacacattaccatgagctgtgacatatctcaaatccaatttggccagatgaatttaaccatt 203  Q
    |||||||||||||||||| ||| ||||||||||||||  |  ||||||||||||| ||||||||||||||||||    
T  27841257 taaggatcaaagaacacactactatgagctgtgacatgacataaatccaatttggtcagatgaatttaaccatt 27841330  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 14185617 - 14185531
Alignment:
Q  28 gaagatgataaacagacaaagaataaactaatgcaaataaatgtttacaatagcattctttaaaaataatcacaacatgtataggta 114  Q
    |||||||||||||| ||||||| ||||||| |  || | ||||| ||| ||| |||||||||||| |||||||||||||||||||||    
T  14185617 gaagatgataaacaaacaaagattaaactattataacttaatgtctactatatcattctttaaaactaatcacaacatgtataggta 14185531  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 31769941 - 31770002
Alignment:
Q  150 accatgagctgtgacatatctcaaatccaatttggccagatgaatttaaccattcttctcca 211  Q
    |||||||| ||||||||||| |||||||||||||  ||||||||||||| || || ||||||    
T  31769941 accatgagttgtgacatatcacaaatccaatttgatcagatgaatttaatcaatcatctcca 31770002  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 7607384 - 7607442
Alignment:
Q  153 atgagctgtgacatatctcaaatccaatttggccagatgaatttaaccattcttctcca 211  Q
    ||||| ||||||||||| ||||| ||||||| |||||||||||||| || || ||||||    
T  7607384 atgagttgtgacatatcacaaattcaatttgaccagatgaatttaatcaatcatctcca 7607442  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 14185511 - 14185453
Alignment:
Q  153 atgagctgtgacatatctcaaatccaatttggccagatgaatttaaccattcttctcca 211  Q
    ||||| ||||||||||| |||||||||||||  ||||||||||||| || || ||||||    
T  14185511 atgagttgtgacatatcacaaatccaatttgatcagatgaatttaatcaatcatctcca 14185453  T

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Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 291 - 396
Target Start/End: Original strand, 11636957 - 11637060
Alignment:
Q  291 gaaccaaacccacaataaatctatatatgaacaacaattaccttgatttctgcaagtaacatacaaagataccaaaagcctccttacaatcagaaacatt 390  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||| | ||| |||||||||||||||||||||||| |  | |||||| |||||||    
T  11636957 gaaccaaacccacaataaatctatacgcgaacaacaattaccttgatttgtacaaataacatacaaagataccaaaagccac--tccaatcacaaacatt 11637054  T
Q  391 caacct 396  Q
    ||||||    
T  11637055 caacct 11637060  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 16360521 - 16360448
Alignment:
Q  130 taaggatcaaagaacacattaccatgagctgtgacatatctcaaatccaatttggccagatgaatttaaccatt 203  Q
    |||||||||||||||||| ||| ||||| |||||||| ||  ||||||||||||| ||||||||||||||||||    
T  16360521 taaggatcaaagaacacactactatgagttgtgacatgtcataaatccaatttggtcagatgaatttaaccatt 16360448  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 41811069 - 41811024
Alignment:
Q  153 atgagctgtgacatatctcaaatccaatttggccagatgaatttaa 198  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  41811069 atgagttgtgacatatcacaaatccaatttgaccagatgaatttaa 41811024  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 32445407 - 32445311
Alignment:
Q  15 tttgaaacctgttgaagatgataaacagacaaagaataaactaatgcaaataaatgtttacaatagcattctttaaaaataatcacaacatgtataggta 114  Q
    ||||||||||||  ||||||| ||||| |||||  || |||| |||||| | ||| ||||||||  |||||||||||  |||||||||||||||||||||    
T  32445407 tttgaaacctgtataagatgacaaacacacaaa--attaacttatgcaacttaat-tttacaattacattctttaaagctaatcacaacatgtataggta 32445311  T

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