View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8499_high_11 (Length: 303)

Name: NF8499_high_11
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8499_high_11
NF8499_high_11
[»] chr5 (4 HSPs)
chr5 (29-142)||(10059403-10059516)
chr5 (185-270)||(22023749-22023835)
chr5 (153-237)||(32176964-32177048)
chr5 (190-242)||(39965306-39965359)
[»] chr3 (5 HSPs)
chr3 (150-237)||(33513407-33513495)
chr3 (190-289)||(20704962-20705062)
chr3 (159-237)||(25123224-25123303)
chr3 (190-243)||(25838095-25838148)
chr3 (216-282)||(42110951-42111017)
[»] chr2 (3 HSPs)
chr2 (159-270)||(24510897-24511008)
chr2 (156-237)||(24166791-24166873)
chr2 (235-287)||(19943467-19943519)
[»] chr8 (2 HSPs)
chr8 (190-240)||(40899658-40899709)
chr8 (155-240)||(4656605-4656691)
[»] chr6 (1 HSPs)
chr6 (151-240)||(33240883-33240971)
[»] chr7 (1 HSPs)
chr7 (150-237)||(40256801-40256889)
[»] chr4 (1 HSPs)
chr4 (190-237)||(9603880-9603928)
[»] chr1 (2 HSPs)
chr1 (190-237)||(48779692-48779740)
chr1 (152-231)||(52225859-52225939)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 10059516 - 10059403
Alignment:
Q  29 tatactcatatcaaatgattgatggattccgaaaatctcaaccatatttaagaaaattacaaattaaattgtgtatagctttagatgatgtttatcgtta 128  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10059516 tatactcatatcaaatgattgatggattccgaaaatttcaaccatatttaaaaaaattacaaattaaattgtgtatagctttaaatgatgtttatcgtta 10059417  T
Q  129 tttgctaaccatct 142  Q
    ||||||||||||||    
T  10059416 tttgctaaccatct 10059403  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 22023835 - 22023749
Alignment:
Q  185 caccatattcagattctaaaat-cgaaatattttaacatgtttttggaggtttttataggttgctcatgccgtttgagttctataat 270  Q
    |||| |||||| ||||| |||| | |||| ||| ||||||||||||||| |||||||||| || | |||||||| || |||||||||    
T  22023835 caccctattcatattctgaaattccaaatgtttcaacatgtttttggagctttttatagggtgtttatgccgttggaattctataat 22023749  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 32176964 - 32177048
Alignment:
Q  153 cattattttttctaccctattagtttttcatgcaccatattcagattctaaaatc-gaaatattttaacatgtttttggaggtttt 237  Q
    |||||||||||| || |||| ||| | ||| || | |||| | |||||||||||| |||||||||||||||| |||||||||||||    
T  32176964 cattattttttccactctatgagtctctcacgcgctatatacggattctaaaatctgaaatattttaacatg-ttttggaggtttt 32177048  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 39965306 - 39965359
Alignment:
Q  190 tattcagattctaaaat-cgaaatattttaacatgtttttggaggtttttatag 242  Q
    |||||||||| |||||| ||||||||||||| |||||||| ||| |||||||||    
T  39965306 tattcagattttaaaattcgaaatattttaatatgtttttagagatttttatag 39965359  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 33513495 - 33513407
Alignment:
Q  150 ggtcattattttttctaccctattagtttttcatgcaccatattcagattctaaaat-cgaaatattttaacatgtttttggaggtttt 237  Q
    ||||||||||||||| ||||||| ||||| |  |||||| ||||| ||||||||||| | |||||||| ||| |||||| |||||||||    
T  33513495 ggtcattattttttccaccctatgagtttcttgtgcaccctattcggattctaaaatcctaaatatttcaacgtgttttcggaggtttt 33513407  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 289
Target Start/End: Original strand, 20704962 - 20705062
Alignment:
Q  190 tattcagattctaaaatc-gaaatattttaacatgtttttggaggtttttataggttgctcatgccgtttgagttctataatccaatctgcataagacat 288  Q
    |||||||||| ||||||  ||||| ||||||||| |||||||||||||||||  | || | || |||||||  |||||||||| || ||||||| |||||    
T  20704962 tattcagattttaaaatttgaaatgttttaacatatttttggaggtttttatgagatgttgataccgtttggattctataatctaaactgcataggacat 20705061  T
Q  289 g 289  Q
    |    
T  20705062 g 20705062  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 25123224 - 25123303
Alignment:
Q  159 tttttctaccctattagtttttcatgcaccatattcagattctaaaat-cgaaatattttaacatgtttttggaggtttt 237  Q
    |||||| ||| ||| ||||||||  || || ||||||||||||||||| | ||||||||||||  |||||||||||||||    
T  25123224 tttttccaccatatgagtttttcgcgcgccctattcagattctaaaatccaaaatattttaacgcgtttttggaggtttt 25123303  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 25838095 - 25838148
Alignment:
Q  190 tattcagattctaaaat-cgaaatattttaacatgtttttggaggtttttatagg 243  Q
    ||||||||||||||||| | |||||||| ||||||||||| ||||||||||||||    
T  25838095 tattcagattctaaaatccaaaatatttcaacatgttttt-gaggtttttatagg 25838148  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 42111017 - 42110951
Alignment:
Q  216 ttaacatgtttttggaggtttttataggttgctcatgccgtttgagttctataatccaatctgcata 282  Q
    ||||| ||||||||||||||||||| || || | ||| |||| || ||||||||||||| |||||||    
T  42111017 ttaacgtgtttttggaggtttttatggggtgtttatgtcgttcgaattctataatccaacctgcata 42110951  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 24510897 - 24511008
Alignment:
Q  159 tttttctaccctattagtttttcatgcaccatattcagattctaaaatc-gaaatattttaacatgtttttggaggtttttataggttgctcatgccgtt 257  Q
    |||||| ||||||| |||||||||  |||| ||||| |||| ||||||| ||||||||| ||| | |||| |||||||||||| || || | ||||||||    
T  24510897 tttttccaccctatgagtttttcacacaccctattcggattttaaaatctgaaatatttaaacgtatttt-ggaggtttttatgggatgtttatgccgtt 24510995  T
Q  258 tgagttctataat 270  Q
    ||| |||||||||    
T  24510996 tgaattctataat 24511008  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 24166791 - 24166873
Alignment:
Q  156 tattttttctaccctattagtttttcatgcaccatattcagattctaaaat-cgaaatattttaacatgtttttggaggtttt 237  Q
    ||||||||| ||||||| ||||| ||| || || ||||| |||||| |||| |||||||||| ||||||||||| ||||||||    
T  24166791 tattttttccaccctatgagtttctcacgcgccctattcggattcttaaattcgaaatatttcaacatgtttttagaggtttt 24166873  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 19943519 - 19943467
Alignment:
Q  235 ttttataggttgctcatgccgtttgagttctataatccaatctgcataagaca 287  Q
    |||||||||||| | ||||||||||  ||||||||||||| ||||||| ||||    
T  19943519 ttttataggttgtttatgccgtttggattctataatccaaactgcataggaca 19943467  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 40899658 - 40899709
Alignment:
Q  190 tattcagattctaaaatc-gaaatattttaacatgtttttggaggtttttat 240  Q
    |||||||||| ||||||| ||||||||||||| |||||||| ||||||||||    
T  40899658 tattcagattttaaaatctgaaatattttaacgtgtttttgaaggtttttat 40899709  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 4656691 - 4656605
Alignment:
Q  155 ttattttttctaccctattagtttttcatgcaccatattcagattctaaaatc-gaaatattttaacatgtttttggaggtttttat 240  Q
    |||||||||||||||||| |||||||| |||| | ||| |||||| || |||| ||||| ||||||  |||||||  ||||||||||    
T  4656691 ttattttttctaccctataagtttttcttgcatcttatccagattttagaatctgaaatgttttaatgtgtttttaaaggtttttat 4656605  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 33240971 - 33240883
Alignment:
Q  151 gtcattattttttctaccctattagtttttcatgcaccatattcagattctaaaat-cgaaatattttaacatgtttttggaggtttttat 240  Q
    ||||||||||||| || ||||| ||||| || ||| || ||||| ||||||||||| |||||||||| |||  ||||||| ||||||||||    
T  33240971 gtcattattttttatatcctatgagtttctcgtgcgccctattcggattctaaaatccgaaatatttcaac--gtttttgaaggtttttat 33240883  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 40256801 - 40256889
Alignment:
Q  150 ggtcattattttttctaccctattagtttttcatgcaccatattcagattctaaaatc-gaaatattttaacatgtttttggaggtttt 237  Q
    |||||||||||||   ||||||| ||||||||  || || ||||| |||| ||||||| ||||||||  ||| ||||||||||||||||    
T  40256801 ggtcattatttttctcaccctatgagtttttcgcgcgccttattcggattttaaaatctgaaatattgcaacgtgtttttggaggtttt 40256889  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 9603928 - 9603880
Alignment:
Q  190 tattcagattctaaaatc-gaaatattttaacatgtttttggaggtttt 237  Q
    |||||| ||||||||||| ||||||||||||| | ||||||||||||||    
T  9603928 tattcaaattctaaaatctgaaatattttaacgtatttttggaggtttt 9603880  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 48779692 - 48779740
Alignment:
Q  190 tattcagattctaaaat-cgaaatattttaacatgtttttggaggtttt 237  Q
    ||||| ||||||||||| |||||||||| |||||||||||| |||||||    
T  48779692 tattcggattctaaaattcgaaatatttcaacatgtttttgaaggtttt 48779740  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 52225939 - 52225859
Alignment:
Q  152 tcattattttttctaccctattagtttttcatgcaccatattcagattctaaaat-cgaaatattttaacatgtttttgga 231  Q
    ||||||||||||| ||| ||| | ||| |||| |||| |||||  ||| |||||| |||||||||| ||||||||||||||    
T  52225939 tcattattttttcaaccttatgactttctcatacaccctattcgaattttaaaattcgaaatatttcaacatgtttttgga 52225859  T

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