View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_high_16 (Length: 261)
Name: NF8499_high_16
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 23989132 - 23989360
Alignment:
| Q |
15 |
agattattctttgtttaaaattgttcttcgttgcttattatggttatgataattaatgatgatgtggtctcattaacttattannnnnnnnatgtgtaga |
114 |
Q |
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| T |
23989132 |
agattattctttgtttaaaattgttcttcgttgcttattatggttatgataattaatgatgatgtggtctcattaacttattattatttttatgtgtaga |
23989231 |
T |
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| Q |
115 |
attcggttgagaatcagaagaatggagatatgcatgaggatcagttgtatgatgattcacctgagcatcaacagaatgaatatgaggatgatcagatgag |
214 |
Q |
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| T |
23989232 |
attcggttgagaatcagaagaatggagatacgcatgaggatcagttgtatgatgattcacctgagcatcaacagaatgaatatgaggatgatcagatgag |
23989331 |
T |
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| Q |
215 |
tgaggaggatcattacgacgatatgttat |
243 |
Q |
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| T |
23989332 |
tgaggaggatcattacgacgatatgttat |
23989360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 23982442 - 23982582
Alignment:
| Q |
106 |
atgtgtagaattcggttgagaatcagaagaatggagatatgcatgaggatcagttgtatgatgattc---acctgagcatcaacagaatgaatatgagga |
202 |
Q |
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|||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
23982442 |
atgtgtagaattcggttgtgaatctgaagaatggggatatgcatgaggatcagttgtatgatgattcagtacctgagcatcaacagaatgaagatgagga |
23982541 |
T |
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| Q |
203 |
tgatcagatgagtgaggaggatcattacgacgatatgttat |
243 |
Q |
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| T |
23982542 |
tgatcagatgagtgatgaggatcattatgaggatatgttat |
23982582 |
T |
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