View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_high_23 (Length: 224)
Name: NF8499_high_23
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 10558154 - 10558358
Alignment:
| Q |
1 |
caaagtattcgagaaggcagagaagatgacaggcattgaaagaggaagcataagagccacagttttgattgaaacacttcctgcagtgtttcaaatggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10558154 |
caaagtattcgagaaggcagagaagatgacaggcattgaaagaggaagcataagagccacagttttgattgaaacacttcctgcagtgtttcaaatggat |
10558253 |
T |
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| Q |
101 |
gaaattctgtatgagctcagagatcactctgttggtctcaactgtggccgttgggattacattttcagttatgttaagaccttccatgctcatccggata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10558254 |
gaaattctgtatgagctcagagatcactctgttggtctcaactgtggccgttgggattacattttcagttatgttaagaccttccatgctcatccggata |
10558353 |
T |
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| Q |
201 |
ggttg |
205 |
Q |
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||||| |
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| T |
10558354 |
ggttg |
10558358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 10560254 - 10560372
Alignment:
| Q |
1 |
caaagtattcgagaaggcagagaagatgacaggcattgaaagaggaagcataagagccacagttttgattgaaacacttcctgcagtgtttcaaatggat |
100 |
Q |
| |
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|||||| || ||||||||||||||| || |||||| | |||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||| |
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| T |
10560254 |
caaagtgtttgagaaggcagagaagttggcaggcactaaaagaggaagcata-gagccgctgttctgattgaaacacttcctgcagtgtttcaaatggat |
10560352 |
T |
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| Q |
101 |
gaaattctgtatgagctcag |
120 |
Q |
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|||||| ||||||||||||| |
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| T |
10560353 |
gaaattttgtatgagctcag |
10560372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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