View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_high_24 (Length: 222)
Name: NF8499_high_24
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 28168412 - 28168576
Alignment:
| Q |
40 |
actatcccaatctggaacataagctggcctggtatatccttttaacttagtaagcatcattgatttcaagtcttcatgaccaccaatcaacattattttg |
139 |
Q |
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| T |
28168412 |
actatcccgatctggaacataagctgg-----tatatccttttaacttagtaagcatcgttgatttcaagtcttcatgaccaccaatcaacattattttg |
28168506 |
T |
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| Q |
140 |
cacaaggaaagaaagtaattcagaatggacgacatggaggatttaagctgcataagacgaccttccatat |
209 |
Q |
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| T |
28168507 |
cacaaggaaagaaagtaattcggaatggacgacatggaggatttaagctacataagacgaccttccatat |
28168576 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 28173151 - 28173289
Alignment:
| Q |
71 |
gtatatccttttaacttagtaagcatcattgatttcaagtcttcatgaccaccaatcaacattattttgcacaaggaaagaaagtaattcagaatggacg |
170 |
Q |
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| T |
28173151 |
gtatatctttttaactgagcaagcatcgttgatttcaagtcttcacgaccaccaacgaacattattttacaaaaagaaagaaagtaatttggaatggaca |
28173250 |
T |
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| Q |
171 |
acatggaggatttaagctgcataagacgaccttccatat |
209 |
Q |
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| T |
28173251 |
acatggatgatttaagctacataaggcgaccttccatat |
28173289 |
T |
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