View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8499_high_3 (Length: 541)

Name: NF8499_high_3
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8499_high_3
NF8499_high_3
[»] chr4 (3 HSPs)
chr4 (74-303)||(52748469-52748698)
chr4 (344-527)||(52748696-52748879)
chr4 (449-487)||(39412772-39412810)
[»] chr5 (3 HSPs)
chr5 (449-488)||(461945-461984)
chr5 (449-482)||(461193-461226)
chr5 (439-487)||(12330145-12330193)
[»] chr8 (1 HSPs)
chr8 (449-488)||(30846498-30846537)
[»] scaffold0508 (1 HSPs)
scaffold0508 (449-487)||(4627-4665)
[»] scaffold0022 (1 HSPs)
scaffold0022 (449-487)||(61581-61619)
[»] chr6 (1 HSPs)
chr6 (449-487)||(18605862-18605900)
[»] chr2 (2 HSPs)
chr2 (449-487)||(7994576-7994614)
chr2 (449-487)||(37996586-37996624)
[»] chr1 (3 HSPs)
chr1 (449-487)||(38469288-38469326)
chr1 (442-487)||(17151002-17151047)
chr1 (442-474)||(41133807-41133839)
[»] chr3 (1 HSPs)
chr3 (439-527)||(51377377-51377466)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 74 - 303
Target Start/End: Original strand, 52748469 - 52748698
Alignment:
Q  74 tcaagtgattaatgagcttcccctaagataatcgagtttgattcttaatagaaacacctaagcagacaaaaacttgaaactgtgaaaagacgacaattaa 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  52748469 tcaagtggttaatgagcttcccctaagataatcgagtttgattcttaatagaaacacctaagcagacaaaaactttaaactatgaaaagacgacaattaa 52748568  T
Q  174 agaggagccaagagagtattattaaataagtttaaacctagtgcagctagtcaatcaaaatctatgtaaaaatggaagaagaaaaatcacaccaaaacta 273  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52748569 agaggaggcaagagagtattattaaataagtttaaacctagtgcagcgagtcaatcaaaatctatgtaaaaatggaataagaaaaatcacaccaaaacta 52748668  T
Q  274 tttatccatttaatactaatatacaagtat 303  Q
    ||||||||||||||||||||||||||||||    
T  52748669 tttatccatttaatactaatatacaagtat 52748698  T

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Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 344 - 527
Target Start/End: Original strand, 52748696 - 52748879
Alignment:
Q  344 tattggatttatattggataggtgaatacattagattaccgagttagatgacttaattgtacattttaaagtataaaataatggaagatcgaagataggg 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52748696 tattggatttatattggataggtgaatacattagattaccgagttagatgacttaattgtacattttaaagtaaaaaataatggaagatcgaagataggg 52748795  T
Q  444 tgagctttagcatgggaaaggctagttttttccatcatgggaaaacnnnnnnnnaccattaaattaaagaggagtattgatttt 527  Q
    |||||||||||||||||||||||| ||||||||||||||  ||| |        ||||||| ||||||||||||||||||||||    
T  52748796 tgagctttagcatgggaaaggctaattttttccatcatgaaaaagcttttttttaccattatattaaagaggagtattgatttt 52748879  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 487
Target Start/End: Original strand, 39412772 - 39412810
Alignment:
Q  449 tttagcatgggaaaggctagttttttccatcatgggaaa 487  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  39412772 tttagcatgggaaaggctaatttttcccatcatgggaaa 39412810  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 488
Target Start/End: Complemental strand, 461984 - 461945
Alignment:
Q  449 tttagcatgggaaaggctagttttttccatcatgggaaaa 488  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  461984 tttagcatgggaaaggctagttttttccaccatgggaaaa 461945  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Original strand, 461193 - 461226
Alignment:
Q  449 tttagcatgggaaaggctagttttttccatcatg 482  Q
    ||||||||||||||||||||||||||||| ||||    
T  461193 tttagcatgggaaaggctagttttttccaccatg 461226  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 487
Target Start/End: Original strand, 12330145 - 12330193
Alignment:
Q  439 tagggtgagctttagcatgggaaaggctagttttttccatcatgggaaa 487  Q
    ||||||||  ||||||||||||||||||| ||||| ||| |||||||||    
T  12330145 tagggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaa 12330193  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 488
Target Start/End: Complemental strand, 30846537 - 30846498
Alignment:
Q  449 tttagcatgggaaaggctagttttttccatcatgggaaaa 488  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  30846537 tttagcatgggaaaggctaattttttccaccatgggaaaa 30846498  T

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Target: scaffold0508 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 4665 - 4627
Alignment:
Q  449 tttagcatgggaaaggctagttttttccatcatgggaaa 487  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  4665 tttagcatgggaaagactaattttttccatcatgggaaa 4627  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 487
Target Start/End: Original strand, 61581 - 61619
Alignment:
Q  449 tttagcatgggaaaggctagttttttccatcatgggaaa 487  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  61581 tttagcatgggaaaggctaatttttcccatcatgggaaa 61619  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 18605900 - 18605862
Alignment:
Q  449 tttagcatgggaaaggctagttttttccatcatgggaaa 487  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  18605900 tttagcatgggaaaggctaattttttccaccatgggaaa 18605862  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 7994614 - 7994576
Alignment:
Q  449 tttagcatgggaaaggctagttttttccatcatgggaaa 487  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  7994614 tttagcatgggaaaggctaattttttccaccatgggaaa 7994576  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 37996624 - 37996586
Alignment:
Q  449 tttagcatgggaaaggctagttttttccatcatgggaaa 487  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  37996624 tttagcatgggaaaggctaatttttcccatcatgggaaa 37996586  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 38469326 - 38469288
Alignment:
Q  449 tttagcatgggaaaggctagttttttccatcatgggaaa 487  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  38469326 tttagcatgggaaaggctaattttttccaccatgggaaa 38469288  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 487
Target Start/End: Original strand, 17151002 - 17151047
Alignment:
Q  442 ggtgagctttagcatgggaaaggctagttttttccatcatgggaaa 487  Q
    |||||| |||||||||||||||||| |||||| ||| |||||||||    
T  17151002 ggtgaggtttagcatgggaaaggctggtttttcccaccatgggaaa 17151047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 474
Target Start/End: Original strand, 41133807 - 41133839
Alignment:
Q  442 ggtgagctttagcatgggaaaggctagtttttt 474  Q
    |||||| ||||||||||||||||||||||||||    
T  41133807 ggtgaggtttagcatgggaaaggctagtttttt 41133839  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 527
Target Start/End: Original strand, 51377377 - 51377466
Alignment:
Q  439 tagggtgagctttagcatgggaaaggctagttttttccatcatgggaaaac-nnnnnnnnaccattaaattaaagaggagtattgatttt 527  Q
    ||||||||| |||||||||||||| |||||||||||| | ||||| ||| |         ||||||| ||||||||||||||||||||||    
T  51377377 tagggtgaggtttagcatgggaaatgctagttttttctaccatggaaaagcttttttctgaccattagattaaagaggagtattgatttt 51377466  T

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