View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_high_5 (Length: 402)
Name: NF8499_high_5
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 8047447 - 8047070
Alignment:
| Q |
19 |
atttcccctacaaccaattcatcacaattcacaaaccatgtaataaaaaattcactccaatctttcccttcaaaattccaaggggtataatcagannnnn |
118 |
Q |
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| T |
8047447 |
atttcccctacaaccaattcatcacaattcacaaaccatgtattaaaaaattcactccaatctttcccttcaaaattctaaggggtataatcagactttt |
8047348 |
T |
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| Q |
119 |
nncctacacctcaatcattcatgaaaatcaagacatagactcttaaagttaatttaaagaacggaaaatctctttgccaagataacttagaagtaaggaa |
218 |
Q |
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| T |
8047347 |
ttcctacacctcaatcattcatgaaaatcaagacatagactcttaaagttaatttaaagaacggaaaatctctttgccaagataacttagaagtaaggaa |
8047248 |
T |
|
| Q |
219 |
atagattttttgtgtttacctcttaaaaaggtgtttttatcaaaataattaacacttgt-nnnnnnnntcaaaataattaacacggaaaaatacctacat |
317 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8047247 |
atagattttttgtgcttacctcttaaaaaggtgtttttatcaaaataattaacacttgtaaaaaaaaatcaaaataattaacacggaaaaatacctacat |
8047148 |
T |
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| Q |
318 |
atttatcactctaggtagtctagctagcatgaaacagaaaacggtgctattctttccattttgaatgcatttcttctc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8047147 |
atttatcactctaggtagtctagctagcatgaaacaaaaaacggtgctattctttccattttgaatgcatttcttctc |
8047070 |
T |
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