View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_high_6 (Length: 397)
Name: NF8499_high_6
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 229 - 382
Target Start/End: Original strand, 441244 - 441397
Alignment:
| Q |
229 |
gcctccctttcctttacactttccaccatgaagtggctctaaggtcattttccttccacttaaaactgcataatatttcacaattaacttaaataaccat |
328 |
Q |
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| T |
441244 |
gcctccctttcctttacactttccaccatgaagtggctctaaggtcattttccttccacttaaaactgcataatatttcacaattaacttaaataaccat |
441343 |
T |
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| Q |
329 |
cattcacattatatatcaatcggattaaaataatacacataaagagatcaaagt |
382 |
Q |
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| T |
441344 |
cattcacattatatatcaatcggattaaaataatacacataaagagatcaaagt |
441397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 248 - 334
Target Start/End: Original strand, 453601 - 453687
Alignment:
| Q |
248 |
tttccaccatgaagtggctctaaggtcattttccttccacttaaaactgcataatatttcacaattaacttaaataaccatcattca |
334 |
Q |
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| T |
453601 |
tttccaccattaagtggctccaaaatcaatttccttccacttataactgcataatattgcacaattgacttaaataactatcattca |
453687 |
T |
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