View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8499_high_8 (Length: 387)

Name: NF8499_high_8
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8499_high_8
NF8499_high_8
[»] chr3 (6 HSPs)
chr3 (13-368)||(20304776-20305131)
chr3 (13-368)||(27539947-27540302)
chr3 (20-193)||(25808562-25808736)
chr3 (39-216)||(2290348-2290525)
chr3 (23-106)||(14243096-14243179)
chr3 (122-215)||(3572707-3572800)
[»] scaffold0741 (1 HSPs)
scaffold0741 (13-368)||(5333-5688)
[»] chr5 (3 HSPs)
chr5 (13-364)||(37635507-37635858)
chr5 (125-215)||(25801963-25802053)
chr5 (41-102)||(21346124-21346185)
[»] chr7 (2 HSPs)
chr7 (13-368)||(26176475-26176830)
chr7 (149-215)||(6671506-6671572)
[»] scaffold0065 (1 HSPs)
scaffold0065 (13-364)||(41317-41668)
[»] chr6 (1 HSPs)
chr6 (13-368)||(7653944-7654294)
[»] chr4 (2 HSPs)
chr4 (13-178)||(16599892-16600057)
chr4 (280-367)||(16599801-16599888)
[»] chr1 (3 HSPs)
chr1 (21-215)||(15200507-15200703)
chr1 (23-182)||(15219524-15219683)
chr1 (40-215)||(159933-160108)
[»] chr2 (3 HSPs)
chr2 (20-193)||(12398258-12398431)
chr2 (47-177)||(29803748-29803878)
chr2 (122-215)||(18856338-18856431)
[»] chr8 (1 HSPs)
chr8 (39-215)||(25819461-25819637)
[»] scaffold0073 (1 HSPs)
scaffold0073 (125-215)||(41418-41508)


Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 368
Target Start/End: Complemental strand, 20305131 - 20304776
Alignment:
Q  13 aaagagattgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20305131 aaagagattgtttggacactacgcgagaattctagttgatatggattcctcccgtaagatttttcatgaaattgttgttgagagggaatgatatgctttc 20305032  T
Q  113 ccggttgccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaagg 212  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20305031 ccggttgtcgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatccaagaaagg 20304932  T
Q  213 aaatcacaaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaaccc 312  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  20304931 aaatcacaaaggacataacaactgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaacgaaagatacttggattccaaggactaacaaccc 20304832  T
Q  313 ttcagggatcggttcttcaagagcatttggcgcaacacatgacactaattcagcac 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20304831 ttcagggatcggttcttcaagagcatttggcgcaacacatgacactaattcagcac 20304776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 368
Target Start/End: Complemental strand, 27540302 - 27539947
Alignment:
Q  13 aaagagattgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttc 112  Q
    |||||||||||||| ||| || |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27540302 aaagagattgtttgaacattatgcgagaatactagttgatatggatttctcctgtaagatttttcatgaaattgttgttgagagggaaggatatgctttc 27540203  T
Q  113 ccggttgccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaagg 212  Q
    ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||    
T  27540202 ccggttgtcgtggcctatgaatggatgcccgatttttgttctcactgtcagaatatcgggcatgacgtcaccgtctgtagaagattgtatcctagaaagg 27540103  T
Q  213 aaatcacaaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaaccc 312  Q
     || ||||||||  | |||||||||||| ||| |||||  || ||| || |||||||||||| ||| ||||||||| || |||||||||||  |||||||    
T  27540102 taaacacaaaggtaacaacagctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatggattccaaggaccgacaaccc 27540003  T
Q  313 ttcagggatcggttcttcaagagcatttggcgcaacacatgacactaattcagcac 368  Q
    ||||| || ||| |||||   ||| |||||| ||||| ||||||||| | ||||||    
T  27540002 ttcagagaccggctcttccctagcttttggcacaacaaatgacactactccagcac 27539947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 25808736 - 25808562
Alignment:
Q  20 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagat-ttttcatgaaattgttgttgagagggaaggatatgctttcccggtt 118  Q
    ||||||||||| || || |||||||| |||||||||||||||||||||||| | ||||||||| |||||||| || |||||||| | ||| ||| |||||    
T  25808736 ttgtttggacattatgcaagaattcttgttgatatggatttctcccgtaagttattttcatgagattgttgtcgaaagggaagggtttgccttcacggtt 25808637  T
Q  119 gccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcaga 193  Q
    || ||||||||||||||| || | || || |||||||| ||||||||||| || || ||||||||||||||||||    
T  25808636 gcggtggcctatgaatggttgactgatttttgttctcattgtcagaatattggtcacgacgtcactgtctgcaga 25808562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 2290525 - 2290348
Alignment:
Q  39 gaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgccgtggcctatgaatggat 138  Q
    ||||||||||||| ||||||||||| | |||| | |||||||||||  | || || |||||||| ||||| ||| |||| |  ||||| |||||||||||    
T  2290525 gaattctagttgacatggatttctcacataagttatttcatgaaatcatcgtcgaaagggaagggtatgccttcacggtggaggtggcttatgaatggat 2290426  T
Q  139 gcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaat 216  Q
    | | || | |||||| |||||||||||||| || ||||| |||||||  |||||||| || || |||| |||||||||    
T  2290425 gtctgattactgttcacactgtcagaatattggacatgatgtcactgcttgcagaaggctataccctataaaggaaat 2290348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 14243179 - 14243096
Alignment:
Q  23 tttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatat 106  Q
    ||||| |||||||| |||||||||||||||||||||||  | | |||| | |||||||||||||||||||| ||||||||||||    
T  14243179 tttggccactacgctagaattctagttgatatggattttgcacttaagctctttcatgaaattgttgttgaaagggaaggatat 14243096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 3572800 - 3572707
Alignment:
Q  122 gtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 215  Q
    ||||||||||||||| | || || ||||||||||| |||||||||||  | ||||| |||||||| |||||| | || |||||||| |||||||    
T  3572800 gtggcctatgaatggttaccggatttctgttctcattgtcagaatatatgtcatgatgtcactgtttgcagacggctttatcctaggaaggaaa 3572707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0741 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 368
Target Start/End: Original strand, 5333 - 5688
Alignment:
Q  13 aaagagattgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5333 aaagagattgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttc 5432  T
Q  113 ccggttgccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaagg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5433 ccggttgccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcagccatgacgtcactgtctgcagaagactgtatcctagaaagg 5532  T
Q  213 aaatcacaaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaaccc 312  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| |||| ||||||| |||||||    
T  5533 aaatcacaaaggacataacagctgccaaagaaaaaatagcgcatgggaaaaagcaagttcaggcaacgaaagatacttggattcgaaggactgacaaccc 5632  T
Q  313 ttcagggatcggttcttcaagagcatttggcgcaacacatgacactaattcagcac 368  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5633 ttcagggatcggttcttcaagagcatttggtgcaacacatgacactaattcagcac 5688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 37635858 - 37635507
Alignment:
Q  13 aaagagattgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37635858 aaagagattgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgttttc 37635759  T
Q  113 ccggttgccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaagg 212  Q
    | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635758 ctggttgccgtggcctatgaatggatgctcgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaagg 37635659  T
Q  213 aaatcacaaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaaccc 312  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||    
T  37635658 aaatcacaaaggacataacagttgccaaagaaaaaataacgcatgggaaaaagcaagttcaggcaacgaaagatacttggattccaaggactgacaaccc 37635559  T
Q  313 ttcagggatcggttcttcaagagcatttggcgcaacacatgacactaattca 364  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37635558 ttcagggatcggttcttcaagagcatttggcgcaacacatggcactaattca 37635507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 25801963 - 25802053
Alignment:
Q  125 gcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 215  Q
    |||||||||||| | || || ||||||||||||||||||||||| || ||||| |||||||  |||||| | || |||||||| |||||||    
T  25801963 gcctatgaatggttaccggatttctgttctcactgtcagaatataggtcatgatgtcactgcttgcagatggctttatcctaggaaggaaa 25802053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 21346185 - 21346124
Alignment:
Q  41 attctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaagg 102  Q
    ||||| ||||||||||||||||| || ||| | ||||||||||||| ||| || ||||||||    
T  21346185 attctggttgatatggatttctctcgcaagctctttcatgaaattgatgtcgaaagggaagg 21346124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 368
Target Start/End: Original strand, 26176475 - 26176830
Alignment:
Q  13 aaagagattgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26176475 aaagagattgtttggacactacgcgagaattctagttgatatggatttcacccgtaagatttttcatgaaattgttgttgacagggaaggatatgctttc 26176574  T
Q  113 ccggttgccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaagg 212  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26176575 ccggttgtcgtggcctatgaatggattcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaagg 26176674  T
Q  213 aaatcacaaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaaccc 312  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||  ||||||||||| |||| ||||||| | |||||    
T  26176675 aaatcacaaaggacataacagctgccaaagaaataatagcgcatgggaaaaagcaagttcaggcaacaaaagatacttggattcgaaggactgaaaaccc 26176774  T
Q  313 ttcagggatcggttcttcaagagcatttggcgcaacacatgacactaattcagcac 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26176775 ttcagggatcggttcttcaagagcatttggcgcaacacatgacactacttcagcac 26176830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 6671572 - 6671506
Alignment:
Q  149 tgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 215  Q
    |||||||||||||||||||| || ||||| |||||||  |||||| | || |||||||| |||||||    
T  6671572 tgttctcactgtcagaatataggtcatgatgtcactgcttgcagatggctttatcctaggaaggaaa 6671506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 41317 - 41668
Alignment:
Q  13 aaagagattgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41317 aaagagattgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttc 41416  T
Q  113 ccggttgccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaagg 212  Q
    ||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  41417 ccggttgtcgtggtctatgaatggatgcccaacttctgctctcactgtcagaatatcgtccatgacgtcactgtctgcaaaagactgtatcctagaaagg 41516  T
Q  213 aaatcacaaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaaccc 312  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| |||||||||| | |||||||    
T  41517 aaatcacgaaggacataacagctgccaaagaaaaaatagtgcatgggaaaaagcaagttcaggcaacgaaagatacttggattccaaggattgacaaccc 41616  T
Q  313 ttcagggatcggttcttcaagagcatttggcgcaacacatgacactaattca 364  Q
    ||||||||||||||||||||||||||||||||||||| || |||||| ||||    
T  41617 ttcagggatcggttcttcaagagcatttggcgcaacagatcacactacttca 41668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 368
Target Start/End: Original strand, 7653944 - 7654294
Alignment:
Q  13 aaagagattgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttc 112  Q
    |||||||||||||||||| || | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     |||||    
T  7653944 aaagagattgtttggacattatgtgagaatactagttgatatggatttctcccgtaagatttttcatgaaattgttggtgagagggaagg-----ctttc 7654038  T
Q  113 ccggttgccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaagg 212  Q
    ||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| |||||| |||| || || |||||| |||||||||||||||    
T  7654039 ccggttgccgtggcctatgaatggatgccggatttctgttgtcactgtcagaatatcgggcatgacatcaccgtatgtagaagattgtatcctagaaagg 7654138  T
Q  213 aaatcacaaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaaccc 312  Q
     || ||||||||  | |||||||||||| ||| |||||  || ||| || ||||||||| || ||| ||||||||| || |||||||||||| |||||||    
T  7654139 taaacacaaaggtaacaacagctgccaaggaacaaatagcgcttggaaagaagcaagtttagacaaagaaagatacatggattccaaggactgacaaccc 7654238  T
Q  313 ttcagggatcggttcttcaagagcatttggcgcaacacatgacactaattcagcac 368  Q
    |||||||||||  |||||    || |||||||||||| ||||||||| ||||||||    
T  7654239 ttcagggatcgactcttccctggcttttggcgcaacaaatgacactacttcagcac 7654294  T

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Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 16600057 - 16599892
Alignment:
Q  13 aaagagattgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttc 112  Q
    |||||| ||||||||||| || |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16600057 aaagagtttgtttggacattatgcgagagtactagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttc 16599958  T
Q  113 ccggttgccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgac 178  Q
    ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||||    
T  16599957 ccggttgccgtggcctatgaatggatgccggatttctattctcactgtcagaatatcgggcatgac 16599892  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 367
Target Start/End: Complemental strand, 16599888 - 16599801
Alignment:
Q  280 gaaagatacttgaattccaaggactaacaacccttcagggatcggttcttcaagagcatttggcgcaacacatgacactaattcagca 367  Q
    ||||||||| || |||||||||||| |||| |||||||||||||| |||||   ||| |||||||||||| ||||||||| |||||||    
T  16599888 gaaagatacatggattccaaggactgacaagccttcagggatcggctcttccctagcttttggcgcaacaaatgacactacttcagca 16599801  T

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Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 15200703 - 15200507
Alignment:
Q  21 tgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgc 120  Q
    ||||| |||| || || ||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  ||      
T  15200703 tgtttagacattatgcaagaattctagtcgatatggacttctcccgtaagatttttcacgaaattgttgtcgagagggaaggatatgctttcccaatttt 15200604  T
Q  121 cgtggcctatgaatggatgcccgacttctgttctcactgtcaga--atatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 215  Q
     ||||||||  ||||||||||||| ||||||||||||||| |||  ||||||| ||||| |||| ||||||||||||| |||| |||||||||||||    
T  15200603 tgtggcctacaaatggatgcccgatttctgttctcactgtaagatcatatcgggcatgatgtcattgtctgcagaagattgtaccctagaaaggaaa 15200507  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 15219683 - 15219524
Alignment:
Q  23 tttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgccg 122  Q
    |||||||| || || ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||   |    
T  15219683 tttggacattatgcaagaattctagtcgatatggacttctcccgtaagatttttcatgaaattgttgtcgagagggaaggatatgctttcccgatttttg 15219584  T
Q  123 tggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtca 182  Q
    |||||||  ||||||||||||| ||||||||||||||| |||||||||| ||||| ||||    
T  15219583 tggcctacaaatggatgcccgatttctgttctcactgtaagaatatcgggcatgatgtca 15219524  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 160108 - 159933
Alignment:
Q  40 aattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgccgtggcctatgaatggatg 139  Q
    |||||| ||||||||||||||||| || |||   ||||||||||||| ||| || |||||||| | | | ||  | || |  ||||||||||||||| |     
T  160108 aattctggttgatatggatttctctcgcaagcgctttcatgaaattgatgtcgaaagggaagggtgttcctttacagtcgaagtggcctatgaatggtta 160009  T
Q  140 cccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 215  Q
    || || ||||||||||||| ||||||||| || ||||| ||||||   |||||| | || |||||||| |||||||    
T  160008 ccggatttctgttctcactttcagaatataggtcatgatgtcactacttgcagacggctttatcctaggaaggaaa 159933  T

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Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 12398431 - 12398258
Alignment:
Q  20 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 119  Q
    ||||||||||| || || |||||||| |||||||||||||||||||||||| | |||||||||||||||||||| | |||||| | ||| ||| ||||||    
T  12398431 ttgtttggacattatgcaagaattcttgttgatatggatttctcccgtaagttatttcatgaaattgttgttgaaaaggaagggtttgccttcacggttg 12398332  T
Q  120 ccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcaga 193  Q
    | ||||||||||||||| |||| || ||||||||||| ||| ||||||| || || |||||||| |||||||||    
T  12398331 cggtggcctatgaatggttgcctgatttctgttctcattgttagaatattggtcacgacgtcacggtctgcaga 12398258  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 29803748 - 29803878
Alignment:
Q  47 gttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgccgtggcctatgaatggatgcccgact 146  Q
    ||||||||||||||||| || ||  | ||||| |||||||| || || |||||||| ||||| || | |||  | ||||||||||||||| | || || |    
T  29803748 gttgatatggatttctctcgcaaactctttcacgaaattgtggtcgaaagggaagggtatgcctttctggtgacggtggcctatgaatggttaccagatt 29803847  T
Q  147 tctgttctcactgtcagaatatcggccatga 177  Q
    |||||||||||||||||||||| || |||||    
T  29803848 tctgttctcactgtcagaatatagggcatga 29803878  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 18856338 - 18856431
Alignment:
Q  122 gtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 215  Q
    ||||||||||||||| | || || ||||||||||||||||||||||| || ||||| |||||||  |||||| |  | |||||||| |||||||    
T  18856338 gtggcctatgaatggttaccggatttctgttctcactgtcagaatataggtcatgatgtcactgcttgcagacggatttatcctaggaaggaaa 18856431  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 215
Target Start/End: Original strand, 25819461 - 25819637
Alignment:
Q  39 gaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgccgtggcctatgaatggat 138  Q
    |||||||||| || ||||||||||| ||||| || |||||||||||  | ||||| |||||| | ||||| ||| || | |  ||||| |||||||||||    
T  25819461 gaattctagtcgacatggatttctctcgtaaaatatttcatgaaatcatcgttgaaagggaatggtatgccttcacgttggaggtggcttatgaatggat 25819560  T
Q  139 gcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 215  Q
    ||| || || ||||| || ||||||||||| || ||||| |||| ||  |||||| |||| |||||  |||||||||    
T  25819561 gcctgatttttgttcacattgtcagaatattggacatgatgtcattgcttgcagacgactatatccccgaaaggaaa 25819637  T

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Target: scaffold0073 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 41508 - 41418
Alignment:
Q  125 gcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 215  Q
    |||||||||||| | || || ||||||||||||||||||||||| || ||||| |||||||  |||||| | || |||||||| |||||||    
T  41508 gcctatgaatggttaccggatttctgttctcactgtcagaatataggtcatgatgtcactgcttgcagatggctttatcctaggaaggaaa 41418  T

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