View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_low_1 (Length: 732)
Name: NF8499_low_1
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 392
Target Start/End: Original strand, 27154130 - 27154510
Alignment:
| Q |
12 |
gattatactagtatacgattaaattgattttttagattcttttttgatccacagttattatcaatagaaatgatgagtttaaggaatgcaagattttgct |
111 |
Q |
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| T |
27154130 |
gattatactagtatacgattaaattgagtttttagattcttttttgatccaaagttattatcaatagaaatgatgaggttaaggaatgcaagattttgct |
27154229 |
T |
|
| Q |
112 |
tattctattgctttcctcacctaattacttcaattatagttacattttgttgtttatgatttctatctttctgcttgcttttgctctgcattttcttgta |
211 |
Q |
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| T |
27154230 |
tattctattgctttcctcacctaattacttcaattatagttacattttgttgtttgtgatttctatctttgtgcttgcttttgctctgcattttcttgta |
27154329 |
T |
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| Q |
212 |
agaatatcactactacttactcaaagttccatgagcaaattgtactgtagcctctatactttaaactttatgcctaaacatgatttcattaaccttcccc |
311 |
Q |
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| T |
27154330 |
agaatatcactactacttactcaaagttccatgagcaaattgtactgtagcctctatactttaaactttatgtctaaacatgatttcattaaccttcccc |
27154429 |
T |
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| Q |
312 |
acttgaacagttgaacctccctatcttttcctcaagcatgtttattaagagatatctagttcattatgatgcaatatccat |
392 |
Q |
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| T |
27154430 |
acttgaacagttgaacctccctatcttttcctcaagaatgtttattaagagatatctagttcattatgatgcaatatccat |
27154510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 399 - 715
Target Start/End: Original strand, 27154541 - 27154858
Alignment:
| Q |
399 |
caccatgtcatgcaccatttccgaaggaatgcagaatctgaaagcaaagttcctcaaacccatctgctgcttgatcaacttattctgataatctgctcca |
498 |
Q |
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| T |
27154541 |
caccatgtcgtgcaccatttccgaaggaatgcagaatctgaaagcaaagttccacaaacccatctgctgcttgatcaacgtattctgataatcttctcca |
27154640 |
T |
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| Q |
499 |
aatggcctgcttccatccagtcctcacgcgctttgtgtcaaccaaaaaaggcatggaaatcattttcatatgtgccatcacagtagggacaatagaccta |
598 |
Q |
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| T |
27154641 |
a-tggcctgcttccatccagtcctcacgcgctttgtgtcaaccaaaaaaggcatggaaatcattttcatatgtgccatcacagtagggaaaatagaccta |
27154739 |
T |
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| Q |
599 |
acagtccacaccctttgtctgcaatctt------gtcgggagacaccctccctattgtagcaactaacaaaccaggccaattaccaggtactcggaattc |
692 |
Q |
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| T |
27154740 |
acagtccacaccctttgtctgcaatcttgttctagtcgggagaca----ccctattgtaacaactaacaaaccaggccaattaccaggtactcggaattc |
27154835 |
T |
|
| Q |
693 |
tgaattagcaaggagtgtcttta |
715 |
Q |
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| T |
27154836 |
tgaattagcaaggagtgtcttta |
27154858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 21435448 - 21435590
Alignment:
| Q |
12 |
gattatactagtatacgattaaattgatt---ttttagattcttttttgatccacagttattatcaatagaaatgatgagtttaaggaatgcaagatttt |
108 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||| ||| | |||| |||||||| || || ||||||| |
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| T |
21435448 |
gattatactagtatacgattaaattgattactttttagattgttttttggtccactgttattatcgatacacatgaagagtttaatgagtgaaagatttg |
21435547 |
T |
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| Q |
109 |
gcttattctattgctttcctcacctaattacttcaattatagt |
151 |
Q |
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|| |||||||||| |||| ||| |||| ||||||||||||||| |
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| T |
21435548 |
gcgtattctattggtttcgtcaactaagtacttcaattatagt |
21435590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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