View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_low_10 (Length: 387)
Name: NF8499_low_10
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 22 - 372
Target Start/End: Complemental strand, 20585760 - 20585407
Alignment:
| Q |
22 |
ctcaaaaccctaaacactacttccgactcctttcacaccctcaccattcccgccaataaactctaagaactttcaacctctccaccctgcgcctgccctt |
121 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20585760 |
ctcaaaaccctaaacactacttccgacccctttcacaccctcaccattcccgccaataaactcttagaactttcaacctctccaccctgcgcctgccctt |
20585661 |
T |
|
| Q |
122 |
---tatcttcaatatgagataatgcattaaacatgttagcattaatccctttaaaatgtaccttaatagcttcacctacctctgtcacatccttagcaat |
218 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20585660 |
ctttatctttaatatgagataatgcattaaacatgttagcattattccctttaaaatgtaccttaatagcttcacctacctctgtcacatccttagcaat |
20585561 |
T |
|
| Q |
219 |
cacattctgattgacatgtaaaatcaccaaattttccctatcatcgctgctcatcgaactctttgttccctttgacaatgatacgttgttgcccttctcc |
318 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||||||||| |
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| T |
20585560 |
cacattctgattgacatgtaaaatcacacaattttccctatcattgctgctcatcgaactctttgttcccactgacaatgatacatcattgcccttctcc |
20585461 |
T |
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| Q |
319 |
acctttggcatggaagtttttactactctcgcctctcccttccttcaccttcat |
372 |
Q |
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|||||||||||| || |||| |||||||||||||| |||||||||||||||||| |
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| T |
20585460 |
acctttggcatgtaatttttcactactctcgcctcccccttccttcaccttcat |
20585407 |
T |
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