View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_low_11 (Length: 369)
Name: NF8499_low_11
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 24 - 362
Target Start/End: Complemental strand, 17597598 - 17597260
Alignment:
| Q |
24 |
agaaggaccagtcttgaaatctactcctccaaatccatattgttgcacaacaagtattgatgaatttgaaccaaaactatttgatgctaacatgtcacca |
123 |
Q |
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| T |
17597598 |
agaaggatcagtcttgaaatctactcctccaaatccatattgttgcacaacaagtattgatgaatttgaaccaaaactatttgatgctaacatgtcacca |
17597499 |
T |
|
| Q |
124 |
ataacaccaagttcaggacaatcagcccattccaacaattctgtcaaaaccaaagagtttcttccttttccatgacctaaaatatatagatcaaacccta |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17597498 |
ataacaccaagttcaggacaatcagcccattccaacaattctgtcaaaaccaaagagtttcttccttttccatgacctaaaatatatagatcaaacccta |
17597399 |
T |
|
| Q |
224 |
atttgtccaattcttcaagcactataggaatgtcttcaccagtatgcacttctctttcttcataagttatagtatcctcattgttcactgccttaagtcg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17597398 |
atttgtccaattcttcaagcactataggaatgtcttcaccagtatgcacttctctttcttcataagttatagtatcctcattgttcactgccttaagtcg |
17597299 |
T |
|
| Q |
324 |
aaacgaacctacacggtcttcgtccaactctctctgctt |
362 |
Q |
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| T |
17597298 |
aaacgaacctacacggtcttcgtccaactctctttgctt |
17597260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 13653287 - 13653187
Alignment:
| Q |
58 |
ccatattgttgcacaacaagtattgatgaatttgaaccaaaactatttgatgctaacatgtcaccaataacaccaagttcaggacaatcagcccattcca |
157 |
Q |
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| T |
13653287 |
ccatattgttgcacaactaacactgatgaacccgaactaaaattgtttgatgccaacatatccccgataactccaagttctggacaatcacaccattcca |
13653188 |
T |
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| Q |
158 |
a |
158 |
Q |
| |
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| |
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| T |
13653187 |
a |
13653187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 16289201 - 16289153
Alignment:
| Q |
93 |
accaaaactatttgatgctaacatgtcaccaataacaccaagttcagga |
141 |
Q |
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|||||| ||| |||| ||||| |||||||| |||||||||||||||||| |
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| T |
16289201 |
accaaagctagttgaagctaatatgtcacctataacaccaagttcagga |
16289153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 17260562 - 17260610
Alignment:
| Q |
93 |
accaaaactatttgatgctaacatgtcaccaataacaccaagttcagga |
141 |
Q |
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|||||| ||| |||| ||||| |||||||| |||||||||||||||||| |
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| T |
17260562 |
accaaagctagttgaagctaatatgtcacctataacaccaagttcagga |
17260610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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