View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_low_12 (Length: 366)
Name: NF8499_low_12
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 4652887 - 4653252
Alignment:
| Q |
1 |
ttcgagtttcgtgtttagggtgcaaaaacaagccattctaccgtgttatggcttctgatagcagatctccaagagatggaaagcacctcgaagttcttgg |
100 |
Q |
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| T |
4652887 |
ttcgactttcatgtttagggtgcaaaaacaagccattctaccgtgttatggcttctgatagcagatctccaagagatggaaagcacctcgaagttcttgg |
4652986 |
T |
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| Q |
101 |
ttactataatcccttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagtcattaatactgatagaaatggaaag |
200 |
Q |
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| T |
4652987 |
ttactataatcccttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagtcattaatactgatagaaatggaaag |
4653086 |
T |
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| Q |
201 |
cacactcgtcagtgctcgtcatgacactaacacatgtgattgcactcagttaaataatttttcaaattatcattgatgtcgacgtgtctatgtaagtaca |
300 |
Q |
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| T |
4653087 |
cacactcgtcagtgcccgtcatgacactaacacatgtgattgtactcatttaaataatttttcaaattatcattgatgtcgacgtgtctatggaagtaca |
4653186 |
T |
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| Q |
301 |
tgatgtatgtgtcggtgattccatgacctttttgattgaatgcgattacattcaattaattcattt |
366 |
Q |
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| T |
4653187 |
tgatgtatgtgtcggtgattccatgacctttttgattgaatgcgattacattcaattaattcattt |
4653252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 17426931 - 17427103
Alignment:
| Q |
13 |
gtttagggtgcaaaaacaagccattctaccgtgttatggcttctgatagcagatctccaagagatggaaagcacctcgaagttcttggttactataatcc |
112 |
Q |
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| T |
17426931 |
gtttaggatgcaaaaacaaaccattttaccgtgttatggctgctgatagcagatctccgagagatggaaagcacctcgaagttcttggttactataatcc |
17427030 |
T |
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| Q |
113 |
cttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagtcattaatact |
185 |
Q |
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| T |
17427031 |
cttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagtagttattaatact |
17427103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 17428840 - 17428908
Alignment:
| Q |
202 |
acactcgtcagtgctcgtcatgacactaacacatgtgattgcactcagttaaataatttttcaaattat |
270 |
Q |
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| T |
17428840 |
acactcgtaagtgcccgttatgacactaacacatgtgattgcattcaattagttaattttttaaattat |
17428908 |
T |
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