View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_low_13 (Length: 330)
Name: NF8499_low_13
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 311
Target Start/End: Complemental strand, 2167164 - 2166851
Alignment:
| Q |
2 |
gagatataaaaggaatccatgtaaata----tacagtaacacttttgtcatgaaagataatacaacaaatcatttgaactataagaacnnnnnnntgcat |
97 |
Q |
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| T |
2167164 |
gagatataaaaggaatccatgtaaataaatatatagtaacacttttgtcatgaaagagaatacaacaaatcatttgaactataagaacaaaaaaatgcat |
2167065 |
T |
|
| Q |
98 |
accaaagtttagtttcactaacatctcagttttgaggttgcagttgtatagagaccaaaacaa---tggagagcaatgaagtatcaagagttgatagctt |
194 |
Q |
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| T |
2167064 |
atcaaaatttggtttcactaacatctcagttt-gagtttgtagttgta--gagaccaaaacaacaatggagagtaatgaagtatcaagagttgatagctt |
2166968 |
T |
|
| Q |
195 |
aagaagagcaagtagttctaacatatggaggaacaatagcatgaatgttttctcaacgtctgaacgtgaagacgatgaagaagctcttaaatgggctgct |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2166967 |
aagaagagcaagtagttctaacatatggaggaacaatagcatgaatgttttctcaacgtctgaacgtgaagacgatgaagaagctcttaaatgggctgct |
2166868 |
T |
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| Q |
295 |
cttgagagacttcctac |
311 |
Q |
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| T |
2166867 |
attgagagacttcctac |
2166851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 39344153 - 39344203
Alignment:
| Q |
262 |
gaagacgatgaagaagctcttaaatgggctgctcttgagagacttcctact |
312 |
Q |
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| T |
39344153 |
gaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctact |
39344203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 39543595 - 39543545
Alignment:
| Q |
262 |
gaagacgatgaagaagctcttaaatgggctgctcttgagagacttcctact |
312 |
Q |
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| T |
39543595 |
gaagatgatgaagaagctcttaaatgggctgccattcagaaacttcctact |
39543545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 39552818 - 39552768
Alignment:
| Q |
262 |
gaagacgatgaagaagctcttaaatgggctgctcttgagagacttcctact |
312 |
Q |
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||||| |||||||||||||||||||||||||| || ||| |||||||||| |
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| T |
39552818 |
gaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctact |
39552768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 44238495 - 44238445
Alignment:
| Q |
262 |
gaagacgatgaagaagctcttaaatgggctgctcttgagagacttcctact |
312 |
Q |
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| T |
44238495 |
gaagatgatgaagaagctcttaaatgggctgcccttgaaaaactacctact |
44238445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 2882150 - 2882194
Alignment:
| Q |
268 |
gatgaagaagctcttaaatgggctgctcttgagagacttcctact |
312 |
Q |
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| T |
2882150 |
gatgaagaagctcttaaatgggctgcacttgaaaaactccctact |
2882194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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