View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8499_low_14 (Length: 328)

Name: NF8499_low_14
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8499_low_14
NF8499_low_14
[»] chr5 (4 HSPs)
chr5 (4-328)||(9929650-9929979)
chr5 (289-328)||(43554551-43554590)
chr5 (294-328)||(36577671-36577705)
chr5 (288-328)||(39695988-39696028)
[»] chr8 (1 HSPs)
chr8 (104-193)||(30917473-30917562)
[»] scaffold0168 (1 HSPs)
scaffold0168 (260-307)||(21358-21405)
[»] chr3 (1 HSPs)
chr3 (286-323)||(34307767-34307804)
[»] chr6 (1 HSPs)
chr6 (289-328)||(17168453-17168492)
[»] chr4 (2 HSPs)
chr4 (260-311)||(18844425-18844476)
chr4 (260-312)||(14126065-14126117)
[»] chr7 (1 HSPs)
chr7 (260-310)||(7328641-7328691)
[»] chr2 (3 HSPs)
chr2 (288-322)||(1239649-1239683)
chr2 (260-328)||(21616792-21616862)
chr2 (271-328)||(19574008-19574065)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 4 - 328
Target Start/End: Complemental strand, 9929979 - 9929650
Alignment:
Q  4 gtagttttgaaacggtgaagtgctggtccaggggactgcattgttgatccaacaatggtgctaccatccattgttcctatagtagactttcctagcttca 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |    
T  9929979 gtagtcttgaaacggtgaagtgctggtccaggggactgcattgttgatccaacaatggtgctaccatccatggttcctatagtggactttcctagcttta 9929880  T
Q  104 catgcttctttttcacagtcatgtgccatttctttaatgccttggatgtttgttcatcaaatattgattttttcatccttgaacccatctacatgatttt 203  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9929879 catgcttctttttcacagtcatgtgccatttctttaacgccttggatgtttgttcatcaaatattgattttttcatccttgaacccatctacatgatttt 9929780  T
Q  204 tgtcaattagatcaatttcaaatgttaattcatagcgtgcaagtacaagcagatac-----atgaagcacaaacacttctcggattagtcgtgtccgaca 298  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |     |||||||||| ||||| |||| ||||||||||||||| |    
T  9929779 tgtcaattagatcaatttcaaatgttaattcatagcatgcaagtacaagcagatgcaatctatgaagcacagacactcctcgaattagtcgtgtccgata 9929680  T
Q  299 ccgacacgacacatataattacactaaatt 328  Q
    ||||||||||||||||||||||||| ||||    
T  9929679 ccgacacgacacatataattacactgaatt 9929650  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 328
Target Start/End: Complemental strand, 43554590 - 43554551
Alignment:
Q  289 gtgtccgacaccgacacgacacatataattacactaaatt 328  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  43554590 gtgtccgacaccgacacgacacctatgattacactaaatt 43554551  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 36577671 - 36577705
Alignment:
Q  294 cgacaccgacacgacacatataattacactaaatt 328  Q
    |||||||||||||||||||||||||| ||||||||    
T  36577671 cgacaccgacacgacacatataattatactaaatt 36577705  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 39695988 - 39696028
Alignment:
Q  288 cgtgtccgacaccgacacgacacatataattacactaaatt 328  Q
    |||||| |||||||||||||||| ||| |||||||||||||    
T  39695988 cgtgtcggacaccgacacgacacctatgattacactaaatt 39696028  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 30917473 - 30917562
Alignment:
Q  104 catgcttctttttcacagtcatgtgccatttctttaatgccttggatgtttgttcatcaaatattgattttttcatccttgaacccatct 193  Q
    |||||||||||||||||||  |||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||  |||| |||||||    
T  30917473 catgcttctttttcacagtattgtgccatttttttaacgcctttgatgtttggtcatcaaatattgattttttcattgttgatcccatct 30917562  T

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Target: scaffold0168 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 21405 - 21358
Alignment:
Q  260 atgaagcacaaacacttctcggattagtcgtgtccgacaccgacacga 307  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||||    
T  21405 atgaagcacagacacttctcggattaggcgtgtctgacaccgacacga 21358  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 323
Target Start/End: Original strand, 34307767 - 34307804
Alignment:
Q  286 gtcgtgtccgacaccgacacgacacatataattacact 323  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  34307767 gtcgtgtccgacaccgacacgacacttataattacact 34307804  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 328
Target Start/End: Original strand, 17168453 - 17168492
Alignment:
Q  289 gtgtccgacaccgacacgacacatataattacactaaatt 328  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  17168453 gtgtccgacaccgacacgacacctattattacactaaatt 17168492  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 18844425 - 18844476
Alignment:
Q  260 atgaagcacaaacacttctcggattagtcgtgtccgacaccgacacgacaca 311  Q
    |||||||||  |||||||||||||||| ||||||||||||||| || |||||    
T  18844425 atgaagcacggacacttctcggattaggcgtgtccgacaccgatacaacaca 18844476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 14126065 - 14126117
Alignment:
Q  260 atgaagcacaaacacttctcggattagtcgtgtccgacaccgacacgacacat 312  Q
    |||||||||| |||||  ||||||||| |||||||||||| ||||||| ||||    
T  14126065 atgaagcacatacactcttcggattaggcgtgtccgacacggacacgagacat 14126117  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 7328641 - 7328691
Alignment:
Q  260 atgaagcacaaacacttctcggattagtcgtgtccgacaccgacacgacac 310  Q
    ||||||||| ||||||  ||||||||| ||||||||||||| |||||||||    
T  7328641 atgaagcacgaacactcatcggattaggcgtgtccgacaccaacacgacac 7328691  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 322
Target Start/End: Original strand, 1239649 - 1239683
Alignment:
Q  288 cgtgtccgacaccgacacgacacatataattacac 322  Q
    |||||| ||||||||||||||||||||||||||||    
T  1239649 cgtgtcggacaccgacacgacacatataattacac 1239683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 328
Target Start/End: Complemental strand, 21616862 - 21616792
Alignment:
Q  260 atgaagcacaaacacttctcggattagtcgtgtccgacaccg-acacg-acacatataattacactaaatt 328  Q
    |||||||||  |||||||| ||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||    
T  21616862 atgaagcacggacacttcttggattagccgtgtccggcaccggacacgtacacatataattacactgaatt 21616792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 19574065 - 19574008
Alignment:
Q  271 acacttctcggattagtcgtgtccgacaccgacacgacacatataattacactaaatt 328  Q
    ||||| |||| |||||  |||||||||||||||||| ||| |||||||||||| ||||    
T  19574065 acactcctcgaattaggtgtgtccgacaccgacacgccacctataattacactgaatt 19574008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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