View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_low_15 (Length: 311)
Name: NF8499_low_15
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 10979347 - 10979051
Alignment:
| Q |
1 |
tgtcacataatgaattatctggtgaattgcctaatctcgccgcactttttggtttacatgttttggatttaagagaaaatggttttgattctgagctacc |
100 |
Q |
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| T |
10979347 |
tgtcacataatgaattatctggtgaattgcctaatctcgccgcactttttggtttacatgttttggatttaagagaaaatggttttgattctgagatacc |
10979248 |
T |
|
| Q |
101 |
attgatgccgaaatcggttgtcacggtattgctaagtaaaaactcattctcaggtgagattcctgttaaatttggtgagttgaatcagcttcaacatctt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10979247 |
attgatgccgaaatcggttgtcacggtattactaagtaaaaactcattctcaggtgagattcctgttaaatttggtgagttgaatcagcttcaacatctt |
10979148 |
T |
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| Q |
201 |
gatctttcgtcgaatcatcttagcggggttcctccgtcttctttgttctctttgacaaatattagttatttgaatttagcgaaaaatgtgctaagtg |
297 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10979147 |
gatctttcgtcgaatcgtcttagcggggttcctccgtcttctttgttctctttgacaaatattagttatttgaatttagcgaaaaatgtgctaagtg |
10979051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 297
Target Start/End: Original strand, 8165979 - 8166226
Alignment:
| Q |
50 |
tggtttacatgttttggatttaagagaaaatggttttgattctgagctaccattgatgccgaaatcggttgtcacggtattgctaagtaaaaactcattc |
149 |
Q |
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||||||||||||||||||||| ||||||||| |||| || | ||| ||||| | ||||||||| || |||||||| ||| |||| || ||||| || |
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| T |
8165979 |
tggtttacatgttttggatttgagagaaaatcgtttcgaatttgaactaccggttctgccgaaattcgtggtcacggttttgttaagcaataactcgttt |
8166078 |
T |
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| Q |
150 |
tcaggtgagattcctgttaaatttggtgagttgaatcagcttcaacatcttgatctttcgtcgaatcatcttagcggggttcctccgtcttctttgttct |
249 |
Q |
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|| || ||||| || || |||||||| |||||||| ||||||||| | || ||||||||||||||||| | || || || || | ||||||| |
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| T |
8166079 |
tcgggagagataccgaagaagtttggtgaattgaatcatcttcaacatttagacctttcgtcgaatcatctgaagggcacaccgccttcaacattgttct |
8166178 |
T |
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| Q |
250 |
ctttgacaaatattagttatttgaatttagcgaaaaatgtgctaagtg |
297 |
Q |
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||||| ||||| | |||||||||||| | || || ||||||||||||| |
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| T |
8166179 |
ctttgtcaaatttaagttatttgaatcttgcaaacaatgtgctaagtg |
8166226 |
T |
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