View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8499_low_2 (Length: 557)

Name: NF8499_low_2
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8499_low_2
NF8499_low_2
[»] chr4 (3 HSPs)
chr4 (18-243)||(53239926-53240151)
chr4 (397-546)||(53239645-53239795)
chr4 (265-318)||(53239874-53239927)
[»] chr1 (11 HSPs)
chr1 (172-306)||(2170927-2171061)
chr1 (397-546)||(28851745-28851894)
chr1 (188-318)||(28851973-28852103)
chr1 (173-316)||(39481993-39482136)
chr1 (397-546)||(21401732-21401881)
chr1 (497-546)||(2170761-2170810)
chr1 (397-484)||(39482217-39482305)
chr1 (249-316)||(21401582-21401649)
chr1 (187-285)||(6843530-6843628)
chr1 (397-435)||(2170793-2170831)
chr1 (187-239)||(21401076-21401127)
[»] chr6 (2 HSPs)
chr6 (173-316)||(10461568-10461711)
chr6 (397-484)||(10461400-10461488)
[»] chr7 (10 HSPs)
chr7 (173-314)||(37502694-37502834)
chr7 (197-316)||(32248241-32248360)
chr7 (211-314)||(47814731-47814834)
chr7 (197-314)||(33427277-33427390)
chr7 (397-484)||(32248441-32248529)
chr7 (228-281)||(8655850-8655903)
chr7 (397-449)||(37502917-37502969)
chr7 (474-524)||(37502975-37503025)
chr7 (397-468)||(33427123-33427194)
chr7 (413-468)||(47814939-47814994)
[»] chr2 (3 HSPs)
chr2 (172-314)||(18747771-18747913)
chr2 (435-524)||(18748931-18749022)
chr2 (187-285)||(4867406-4867503)
[»] chr8 (4 HSPs)
chr8 (173-312)||(34872079-34872218)
chr8 (398-484)||(31371662-31371749)
chr8 (173-285)||(31371439-31371551)
chr8 (398-546)||(34872304-34872435)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 53240151 - 53239926
Alignment:
Q  18 caatgtataagtagagggctatgtcattttccctctttgaatgtgtgttaccataaatcgaagttgcaacacaaaattcaaactatcccattgtttagtt 117  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53240151 caatgtataagtagaggactctgtcattttccctctttgaatgtgtgttaccataaatcgaagttgcaacacaaaattcaaactatcccattgtttagtt 53240052  T
Q  118 acatgctcatctcttaaaatgtattccttcaacacacatgatcaaattatgattaggcaatttctttgatactccaaataaaattgagtgttttggtact 217  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53240051 acatgctcatctcttaaaatgtattccttcaacacacacgatcaaattatgattaggcaatttctatgatactccaaataaaattgagtgttttggtact 53239952  T
Q  218 ctcaaatgtttaaccaatagaataat 243  Q
    ||||||||||||| ||||||||||||    
T  53239951 ctcaaatgtttaatcaatagaataat 53239926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 397 - 546
Target Start/End: Complemental strand, 53239795 - 53239645
Alignment:
Q  397 ccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtagcctcctctttttctt-ctgggaacacaaaacttcatatatgta 495  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53239795 ccaaatcattaaccaccgtcacaattttctctccaacattcatcatctgaaacgtagcctcctctttttctttctgggaacacaaaacttcatatatgta 53239696  T
Q  496 ccaattttgtctcaaacatctttgaacaaggcttcctttaataacattctt 546  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  53239695 ccaattttgtctcaaacatctttgaacaaggtttcctttaataacattctt 53239645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 53239927 - 53239874
Alignment:
Q  265 atgtcaacattattaaagattaacttaagagaaagagttttggtacacttctat 318  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53239927 atgtcaacattattaaagattgacttaagagaaagagttttggtacacttctat 53239874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 172 - 306
Target Start/End: Complemental strand, 2171061 - 2170927
Alignment:
Q  172 aggcaatttctttgatactccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaataatatcatttcaattaaatgatctatgtcaa 271  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2171061 aggcaatttctatgatactccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaataatgtcatttcaattaaatgatctatgtcaa 2170962  T
Q  272 cattattaaagattaacttaagagaaagagttttg 306  Q
    |||||||||||||||||||||||||||||||||||    
T  2170961 cattattaaagattaacttaagagaaagagttttg 2170927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 397 - 546
Target Start/End: Complemental strand, 28851894 - 28851745
Alignment:
Q  397 ccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtagcctcctctttttcttct-gggaacacaaaacttcatatatgta 495  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||  |||||||||||||| | |||||||||||||||||||||||||    
T  28851894 ccaaatcattaaccactatcacaattttctctccaacatttatcat-tgaaacgtaaactcctctttttctttttgggaacacaaaacttcatatatgta 28851796  T
Q  496 ccaattttgtctcaaacatctttgaacaaggcttcctttaataacattctt 546  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  28851795 ccaattttatctcaaacatctttaaacaaggcttcctttaataacattctt 28851745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 188 - 318
Target Start/End: Complemental strand, 28852103 - 28851973
Alignment:
Q  188 actccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaataatatcatttcaattaaatgatctatgtcaacattattaaagattaa 287  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||| ||||||| ||||||||||||| |    
T  28852103 actctaaataaaattgagtgttttggtactcttaaatgtttaactaatagaataatgtcattttaattaaatgatccatgtcaatattattaaagattga 28852004  T
Q  288 cttaagagaaagagttttggtacacttctat 318  Q
    ||||||| |||||||||||||||||||||||    
T  28852003 cttaagaaaaagagttttggtacacttctat 28851973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 173 - 316
Target Start/End: Original strand, 39481993 - 39482136
Alignment:
Q  173 ggcaatttctttgatactccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaataatatcatttcaattaaatgatctatgtcaac 272  Q
    |||||||||| || ||||| | | |||||| |||||||||||||||||||||||||||| ||||||| | | |||||||||||||||||||  |||||||    
T  39481993 ggcaatttctatggtactctagacaaaattaagtgttttggtactctcaaatgtttaactaatagaaaagtgtcatttcaattaaatgatccttgtcaac 39482092  T
Q  273 attattaaagattaacttaagagaaagagttttggtacacttct 316  Q
    ||||||||||||| | | ||| ||||||||||||||||||||||    
T  39482093 attattaaagattgattgaagggaaagagttttggtacacttct 39482136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 397 - 546
Target Start/End: Original strand, 21401732 - 21401881
Alignment:
Q  397 ccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtagcctcctctttttc--ttctgggaacacaaaacttcatatatgt 494  Q
    |||||||||||||   |||||||||||||| |||||| |||||||||| ||| ||| | |||||||||||  || | ||||||||||||||||| ||  |    
T  21401732 ccaaatcattaactgtcatcacaattttctttccaaccttcatcatcttaaatgtaacttcctctttttcctttttaggaacacaaaacttcatcta--t 21401829  T
Q  495 accaattttgtctcaaacatctttgaacaaggcttcctttaataacattctt 546  Q
    || ||||||||||||||||| |||| |||| ||||||||||||| |||||||    
T  21401830 acgaattttgtctcaaacatatttgtacaaagcttcctttaatagcattctt 21401881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 2170810 - 2170761
Alignment:
Q  497 caattttgtctcaaacatctttgaacaaggcttcctttaataacattctt 546  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2170810 caattttctctcaaacatctttgaacaaggcttcctttaataacattctt 2170761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 484
Target Start/End: Original strand, 39482217 - 39482305
Alignment:
Q  397 ccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtagcctcctctttttc-ttctgggaacacaaaact 484  Q
    ||||||||||||||||||| |||||||||||| || |||||| ||||||| || || |||| |||||||| ||||| ||||||||||||    
T  39482217 ccaaatcattaaccaccattacaattttctcttcatcattcaacatctgagacttaacctcatctttttctttctgcgaacacaaaact 39482305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 21401582 - 21401649
Alignment:
Q  249 ttcaattaaatgatctatgtcaacattattaaagattaacttaagagaaagagttttggtacacttct 316  Q
    ||||||||||||||| ||||||  ||||||||||| |||||||||  |||||||||||||||||||||    
T  21401582 ttcaattaaatgatcaatgtcaggattattaaagactaacttaaggaaaagagttttggtacacttct 21401649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 6843530 - 6843628
Alignment:
Q  187 tactccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaataatatcatttcaattaaatgatctatgtcaacattattaaagatt 285  Q
    ||||| ||| |||||||||||||| ||||||||||||||||| | ||||| || |    |||||||||||||||||| |||||| |||||||| |||||    
T  6843530 tactctaaacaaaattgagtgtttcggtactctcaaatgtttgatcaataaaagagcgacatttcaattaaatgatccatgtcagcattattagagatt 6843628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 2170831 - 2170793
Alignment:
Q  397 ccaaatcattaaccaccatcacaattttctctccaacat 435  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2170831 ccaaatcattaaccaccatcacaattttctctcaaacat 2170793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 21401076 - 21401127
Alignment:
Q  187 tactccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaa 239  Q
    ||||||||| |||||||||||||||| ||| ||| ||| ||||||||||||||    
T  21401076 tactccaaacaaaattgagtgttttgatac-ctcgaatatttaaccaatagaa 21401127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 173 - 316
Target Start/End: Complemental strand, 10461711 - 10461568
Alignment:
Q  173 ggcaatttctttgatactccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaataatatcatttcaattaaatgatctatgtcaac 272  Q
    |||||||||  || ||||||||| |||||||||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||| ||||||||    
T  10461711 ggcaatttccatggtactccaaacaaaattgagtgttttggtactctcaaatatttaaccaatagaaaagtgtcatttcaattaaatgatccatgtcaac 10461612  T
Q  273 attattaaagattaacttaagagaaagagttttggtacacttct 316  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||    
T  10461611 attattaaagattgatttaagggaaagagttttggtacacttct 10461568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 397 - 484
Target Start/End: Complemental strand, 10461488 - 10461400
Alignment:
Q  397 ccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtagcctcctctttttc-ttctgggaacacaaaact 484  Q
    ||||||||||||||||||| |||||||||||| || ||| ||||||||||||| || ||||||||||||| ||||||||||||||||||    
T  10461488 ccaaatcattaaccaccattacaattttctcttcatcatacatcatctgaaacttaacctcctctttttctttctgggaacacaaaact 10461400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 37502694 - 37502834
Alignment:
Q  173 ggcaatttctttgatactccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaataata-tcatttcaattaaatgatctatgtcaa 271  Q
    |||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||     
T  37502694 ggcaatttctatggtactccaaacaaaattgagtgttttggtactctcaaatgtttaaccaatagaa-aatagtcatttcaattaaatgatccatgtcag 37502792  T
Q  272 cattattaaagattaacttaagagaaagagttttggtacactt 314  Q
    |||||||||| ||| ||||| || |||||||||||||||||||    
T  37502793 cattattaaatattgacttatga-aaagagttttggtacactt 37502834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 32248241 - 32248360
Alignment:
Q  197 aaaattgagtgttttggtactctcaaatgtttaaccaatagaataatatcatttcaattaaatgatctatgtcaacattattaaagattaacttaagaga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||| || |||| ||||||||||||||||||||| | ||||  ||    
T  32248241 aaaattgagtgttttggtactctcaaatgtttaaccaatagaaaagtgttatttcaattcaaagatccatgtcaacattattaaagattgatttaaagga 32248340  T
Q  297 aagagttttggtacacttct 316  Q
    ||||||||||||||||||||    
T  32248341 aagagttttggtacacttct 32248360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 211 - 314
Target Start/End: Original strand, 47814731 - 47814834
Alignment:
Q  211 tggtactctcaaatgtttaaccaatagaataatatcatttcaattaaatgatctatgtcaacattattaaagattaacttaagagaaagagttttggtac 310  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||| |||| || ||||||||||| ||||    
T  47814731 tggtactctcaaatgtttaaccaatagaatagtgtcatttcaattaaatgatccatgttaacattattaaagattgacttgagggaaagagtttttgtac 47814830  T
Q  311 actt 314  Q
    ||||    
T  47814831 actt 47814834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 33427390 - 33427277
Alignment:
Q  197 aaaattgagtgttttggtactctcaaatgtttaaccaatagaataatatcatttcaattaaatgatctatgtcaacattattaaagattaacttaagaga 296  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||   |||||||||||||||||| ||| |||||||||||| |||| |||| || ||    
T  33427390 aaaattgagtgttttggtactctcaaatatttaaccaata--ataac--catttcaattaaatgatcaatgccaacattattaaggattgacttgaggga 33427295  T
Q  297 aagagttttggtacactt 314  Q
    ||||||||||||||||||    
T  33427294 aagagttttggtacactt 33427277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 397 - 484
Target Start/End: Original strand, 32248441 - 32248529
Alignment:
Q  397 ccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtagcctcctctttttc-ttctgggaacacaaaact 484  Q
    ||||||||||||||||||| |||||||||||| || ||||||||||||||||| || | ||||||||||| |||| |||||||||||||    
T  32248441 ccaaatcattaaccaccattacaattttctcttcatcattcatcatctgaaacttaacttcctctttttctttctaggaacacaaaact 32248529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 8655850 - 8655903
Alignment:
Q  228 taaccaatagaataatatcatttcaattaaatgatctatgtcaacattattaaa 281  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  8655850 taaccaatagaataatgccatttcaattaaatgatctatgtcagcattattaaa 8655903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 37502917 - 37502969
Alignment:
Q  397 ccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaac 449  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||| ||||    
T  37502917 ccaaatcattaaccgccatcacaattttctctccaaccttcatcatctcaaac 37502969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 474 - 524
Target Start/End: Original strand, 37502975 - 37503025
Alignment:
Q  474 aacacaaaacttcatatatgtaccaattttgtctcaaacatctttgaacaa 524  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  37502975 aacacaaaacttcatctatgtaccaatttcatctcaaacatctttgaacaa 37503025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 468
Target Start/End: Complemental strand, 33427194 - 33427123
Alignment:
Q  397 ccaaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtagcctcctctttttctt 468  Q
    |||||||||||||   |||| ||||||||||||||||||||||| ||| |||||||  || |||||||||||    
T  33427194 ccaaatcattaacggtcatcgcaattttctctccaacattcatcttctcaaacgtaatcttctctttttctt 33427123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 468
Target Start/End: Original strand, 47814939 - 47814994
Alignment:
Q  413 catcacaattttctctccaacattcatcatctgaaacgtagcctcctctttttctt 468  Q
    |||| ||||||||||||||||||||||| ||| ||||||| ||| |||||||||||    
T  47814939 catcgcaattttctctccaacattcatcttctcaaacgtaaccttctctttttctt 47814994  T

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Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 172 - 314
Target Start/End: Original strand, 18747771 - 18747913
Alignment:
Q  172 aggcaatttctttgatactccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaataatatcatttcaattaaatgatctatgtcaa 271  Q
    ||||||||||| |  ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||| ||||||     
T  18747771 aggcaatttctatagtactccaaacaaaatcgagtgttttggtactctcaaatgtttaaccaatagaaaagtgtcatttcaattaaattatccatgtcag 18747870  T
Q  272 cattattaaagattaacttaagagaaagagttttggtacactt 314  Q
    |||||||||| ||| |||||||||| | |||||||||||||||    
T  18747871 cattattaaatattgacttaagagagatagttttggtacactt 18747913  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 524
Target Start/End: Original strand, 18748931 - 18749022
Alignment:
Q  435 ttcatcatctgaaacgtagcctcctctttttc--ttctgggaacacaaaacttcatatatgtaccaattttgtctcaaacatctttgaacaa 524  Q
    |||||||||| ||| ||| |||| ||||||||  ||| |||||||||| ||||||  |||||||||||||  |||||||||||||| |||||    
T  18748931 ttcatcatctcaaaagtaacctcttctttttcctttccgggaacacaagacttcacctatgtaccaatttcatctcaaacatctttaaacaa 18749022  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 4867406 - 4867503
Alignment:
Q  187 tactccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaataatatcatttcaattaaatgatctatgtcaacattattaaagatt 285  Q
    |||||||||||||||||||||||| | ||||| | ||| ||| ||||| | || || || ||||||||||||||||| || ||| |||||||| |||||    
T  4867406 tactccaaataaaattgagtgtttcgatactccctaatatttgaccaacaaaaaaagat-atttcaattaaatgatccatatcagcattattagagatt 4867503  T

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Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 173 - 312
Target Start/End: Original strand, 34872079 - 34872218
Alignment:
Q  173 ggcaatttctttgatactccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaataatatcatttcaattaaatgatctatgtcaac 272  Q
    |||||||| | || ||||||||  |||||||||||||||| |||||||||||||||||| ||||||| | | |||||||||||||| |||| |||||| |    
T  34872079 ggcaatttttatggtactccaaccaaaattgagtgttttgttactctcaaatgtttaactaatagaagagtgtcatttcaattaaacgatcgatgtcagc 34872178  T
Q  273 attattaaagattaacttaagagaaagagttttggtacac 312  Q
    ||||||||| ||| |||||||  ||| |||||||||||||    
T  34872179 attattaaaaattgacttaaggaaaatagttttggtacac 34872218  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 398 - 484
Target Start/End: Original strand, 31371662 - 31371749
Alignment:
Q  398 caaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtagcctcctctttttctt-ctgggaacacaaaact 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| |||||||| ||||||||||||||||    
T  31371662 caaatcattaaccaccatcacaattttctctccaacattcatcatctgtaaggtaacctcctttttttcttgctgggaacacaaaact 31371749  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 173 - 285
Target Start/End: Original strand, 31371439 - 31371551
Alignment:
Q  173 ggcaatttctttgatactccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaataatatcatttcaattaaatgatctatgtcaac 272  Q
    |||||||||| || |||| ||||||||||||||||||||| ||||||||||| ||||||||||| || | | ||||||||||||||| ||  |||| | |    
T  31371439 ggcaatttctatggtacttcaaataaaattgagtgttttgatactctcaaatatttaaccaatataaaagtgtcatttcaattaaataattcatgttagc 31371538  T
Q  273 attattaaagatt 285  Q
    |||||||||||||    
T  31371539 attattaaagatt 31371551  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 546
Target Start/End: Original strand, 34872304 - 34872435
Alignment:
Q  398 caaatcattaaccaccatcacaattttctctccaacattcatcatctgaaacgtagcctcctcttttt-cttctgggaacacaaaacttcatatatgtac 496  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |              |||||||  || |||||||||||||||||     ||||     
T  34872304 caaatcattaaccgccatcacaattttctctccaacattcatcattt--------------tctttttatttttgggaacacaaaacttc----ttgtat 34872385  T
Q  497 caattttgtctcaaacatctttgaacaaggcttcctttaataacattctt 546  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||    
T  34872386 caattttgtctcaaacatctttgaacaaaatttcctttaataacattctt 34872435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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