View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_low_20 (Length: 269)
Name: NF8499_low_20
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 53919059 - 53919312
Alignment:
| Q |
14 |
aggataaaaaacctcagtatgtacaccttaatctagaatcctcaatctattcatacaagatgaatgacttgaatgtatctacccattggatgcatctact |
113 |
Q |
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| T |
53919059 |
aggataaaaaacctcagtatgtacaccttaatcaagaatcctcaatctattcatgcaagatgaatgacttgaatgtatctacccattggatgcatctact |
53919158 |
T |
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| Q |
114 |
cattggaattcgagttttgattcgtcatgtgagggacaaatctcccttcgatgatcatattaacttaatatagaatccttgcactcagaccttcaatgta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53919159 |
cattggaattcgagttttgattcgtcatgtgagggacaaacctcccttcgatgatcatattaacttaatatagaatccttgcactcagaccttcaatgta |
53919258 |
T |
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| Q |
214 |
ttcatagctatttaaccagatgacatattttaatctatgttcttgatgtccatc |
267 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
53919259 |
ttcatatctatttaaccagatgacatattttaatctatgttctttatatccatc |
53919312 |
T |
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