View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8499_low_23 (Length: 265)

Name: NF8499_low_23
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8499_low_23
NF8499_low_23
[»] chr4 (9 HSPs)
chr4 (14-255)||(35106972-35107214)
chr4 (49-255)||(35072682-35072888)
chr4 (49-253)||(35097796-35098000)
chr4 (49-253)||(35098085-35098289)
chr4 (50-245)||(36940478-36940673)
chr4 (102-253)||(36296508-36296659)
chr4 (90-245)||(36961351-36961507)
chr4 (48-163)||(36935858-36935974)
chr4 (126-174)||(36953720-36953768)
[»] chr6 (2 HSPs)
chr6 (47-255)||(24040736-24040944)
chr6 (49-253)||(24014181-24014385)
[»] chr5 (1 HSPs)
chr5 (90-184)||(34919141-34919235)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 35107214 - 35106972
Alignment:
Q  14 aaacaaaagacgagtaacaaagcttgttctgagtt-aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagt 112  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  35107214 aaacaaaagacgagtaacaaagcttgttctgagtttaaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagc 35107115  T
Q  113 gagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacga 212  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35107114 gagaacaccattctccatagcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacga 35107015  T
Q  213 tgccattgatcattcttatcttctttttcaacgttcttctcac 255  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  35107014 tgccattgatcattcttatcttctttttcaaagttcctctcac 35106972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 49 - 255
Target Start/End: Original strand, 35072682 - 35072888
Alignment:
Q  49 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 148  Q
    ||||||||||||| ||||  || |  ||||| ||||| |  ||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  35072682 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 35072781  T
Q  149 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 248  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35072782 cattttcgcattctctggttatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttc 35072881  T
Q  249 ttctcac 255  Q
     ||||||    
T  35072882 ctctcac 35072888  T

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Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 49 - 253
Target Start/End: Complemental strand, 35098000 - 35097796
Alignment:
Q  49 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 148  Q
    ||||||||||||||||||  || |  |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| ||    
T  35098000 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc 35097901  T
Q  149 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 248  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  35097900 cattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattc 35097801  T
Q  249 ttctc 253  Q
     ||||    
T  35097800 ctctc 35097796  T

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Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 49 - 253
Target Start/End: Complemental strand, 35098289 - 35098085
Alignment:
Q  49 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 148  Q
    ||||||||||||||||||  || |  |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| ||    
T  35098289 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc 35098190  T
Q  149 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 248  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  35098189 cattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattc 35098090  T
Q  249 ttctc 253  Q
     ||||    
T  35098089 ctctc 35098085  T

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Target: chr4; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 50 - 245
Target Start/End: Original strand, 36940478 - 36940673
Alignment:
Q  50 accagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatcc 149  Q
    ||||||||| ||||||| ||| | |||| | |||||||||||||  ||||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  36940478 accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatcc 36940577  T
Q  150 attttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacg 245  Q
    ||||| |||||||| || ||||| || ||||||||||| || |||||||||||||||||  ||||||||||||| |||||||||||||| ||||||    
T  36940578 attttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcttctttctcaacg 36940673  T

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Target: chr4; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 102 - 253
Target Start/End: Original strand, 36296508 - 36296659
Alignment:
Q  102 acagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctac 201  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||| || || ||||| ||||||||||| || |||||||||||||    
T  36296508 acagttacagtgagaacaccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctac 36296607  T
Q  202 gctccacacgatgccattgatcattcttatcttctttttcaacgttcttctc 253  Q
    ||||||| ||||||||||| |  ||||| |||||||| ||||||||| ||||    
T  36296608 gctccacgcgatgccattggttgttcttgtcttctttctcaacgttcctctc 36296659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 36961507 - 36961351
Alignment:
Q  90 tcttccttagggacagtgacagtgagaacaccattctccattgca-gctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaat 188  Q
    ||||||||||| | ||| |||||||||||||||||||||  ||   || ||||| |||||||| || ||||||||||  ||||||||| |||||||||||    
T  36961507 tcttccttaggaatagttacagtgagaacaccattctcccatgtttgcattcacctgatccatcttagcattctctgccaatctaaacttcctcatgaat 36961408  T
Q  189 tttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacg 245  Q
    || ||||||||| ||||||| | |||||||| ||  |||||||||||||| ||||||    
T  36961407 ttcccactgctaagctccacgcaatgccattcattgttcttatcttctttctcaacg 36961351  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 36935858 - 36935974
Alignment:
Q  48 taaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctcca-ttgcagctttcacttga 146  Q
    ||||||||||| |||||||  || | |||||||||||| | |||||| |  || || || |||||||||||||||||||||| |||||||||||||||||    
T  36935858 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttga 36935957  T
Q  147 tccattttcgcattctc 163  Q
    |||||||| ||||||||    
T  36935958 tccattttagcattctc 36935974  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 36953720 - 36953768
Alignment:
Q  126 tccattgcagctttcacttgatccattttcgcattctctggtaatctaa 174  Q
    |||||||||||||||||||||||| |||| ||||| || || |||||||    
T  36953720 tccattgcagctttcacttgatccgttttagcattgtcaggcaatctaa 36953768  T

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Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 47 - 255
Target Start/End: Original strand, 24040736 - 24040944
Alignment:
Q  47 ttaaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttga 146  Q
    |||||||||||| |||||||  || | || ||||||||| |  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24040736 ttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcacttga 24040835  T
Q  147 tccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040836 tccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgt 24040935  T
Q  247 tcttctcac 255  Q
    || ||||||    
T  24040936 tcctctcac 24040944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 49 - 253
Target Start/End: Original strand, 24014181 - 24014385
Alignment:
Q  49 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 148  Q
    ||||||||||||| ||||  || |  ||||| ||||| |  ||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  24014181 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 24014280  T
Q  149 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 248  Q
    |||||||||||| || || || || || ||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  24014281 cattttcgcattttcgggcaacctgaatctcctcatgaactttccgctgctgcgctccacacgatgccattgatcgttcttatcttctttctcaacattc 24014380  T
Q  249 ttctc 253  Q
     ||||    
T  24014381 ctctc 24014385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 34919235 - 34919141
Alignment:
Q  90 tcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcat 184  Q
    ||||||||||| ||||| ||||| ||||| |||||||||||  ||||||| || |||||||||||  ||||||| || || ||||||||||||||    
T  34919235 tcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggcaacctaaacctcctcat 34919141  T

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