View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_low_26 (Length: 256)
Name: NF8499_low_26
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14498504 - 14498262
Alignment:
| Q |
1 |
tacttagcttagtctcaaaatcaaaactgcagataaagttcaccagcttgcctcttcaaaatacggatagggatcctctcccgtgtaatgtgtgtgcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14498504 |
tacttagcttagtctcaaaatcaaaactgcagataaagttcaccagcttgcctcttcaaaatacgggtagggatcctctcccgtgtaatgtgtgtgcagt |
14498405 |
T |
|
| Q |
101 |
ggaatctcaaccatccatatttaataccgcatgtggatttgggagaacttaaagataaggatatgcactggacactcgagtaaaaattccactagagagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
14498404 |
ggaatctcaaccatccatatttaataccgcatgtggatttgggagaacttaaagataaggatgtgcactggacactcgagtaaaaattccact-gagagg |
14498306 |
T |
|
| Q |
201 |
atccgttccctttacaaagctgcaaaatacaaataaacaccaaa |
244 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
14498305 |
atccgctccctttacaaaactgcaaaatacaaataaacaccaaa |
14498262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14500176 - 14499934
Alignment:
| Q |
1 |
tacttagcttagtctcaaaatcaaaactgcagataaagttcaccagcttgcctcttcaaaatacggatagggatcctctcccgtgtaatgtgtgtgcagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
14500176 |
tacttagcttagtctcaaaatcaaaactgcaaataaagttcaccagcttgcctcttcaaaatatgggtagggatcctctcccgtgtaatgtgtgtgcagt |
14500077 |
T |
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| Q |
101 |
ggaatctcaaccatccatatttaataccgcatgtggatttgggagaacttaaagataaggatatgcactggacactcgagtaaaaattccactagagagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
14500076 |
ggaatctcaaccatccatatttaataccgcatgtggatttgggagaacttaaagataaggatgtgcactggacactcgagtaaaaattccact-gagagg |
14499978 |
T |
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| Q |
201 |
atccgttccctttacaaagctgcaaaatacaaataaacaccaaa |
244 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
14499977 |
atccgctccctttacaaagctgcaaaatacaaataaacatcaaa |
14499934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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