View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_low_28 (Length: 254)
Name: NF8499_low_28
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_low_28 |
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| [»] scaffold0170 (2 HSPs) |
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Alignment Details
Target: scaffold0170 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 126 - 244
Target Start/End: Complemental strand, 7341 - 7223
Alignment:
| Q |
126 |
agtagggatgttcgcggtgcggttttgagaaaaaagtcattttaaccgtgagataaaaaagcatgcggttcgacttaattcggttgtgtcataccccaaa |
225 |
Q |
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| T |
7341 |
agtagggatgttcgcggtgcggttttgagaaaaaagtcattttaaccgtgagatacaaaagcatgcggttcgacttagttcggttgtgtcataccctaaa |
7242 |
T |
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| Q |
226 |
ctttcaccacttttctctg |
244 |
Q |
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| T |
7241 |
ttttgaccacttttctctg |
7223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 7527 - 7399
Alignment:
| Q |
1 |
tctttaaatattatgaatgatctgattcgatcagaagaacgacgtatggtgtggcaagcttgatgctaattgaatgtttggaacgacgagggtggtgtac |
100 |
Q |
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| T |
7527 |
tctttaaatgttatgaatgatctgattcgatcagaagaacgacgtctggtgtggtaagcttgatgctaattgaatgtttttaacgatgagggtggtgtac |
7428 |
T |
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| Q |
101 |
ctgtaggttctccgatgctcaagttagta |
129 |
Q |
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| T |
7427 |
ctgtaggttcttcgacgctcaagtcagta |
7399 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 24361606 - 24361556
Alignment:
| Q |
145 |
cggttttgagaaaaaagtcattttaaccgtgagataaaaaagcatgcggtt |
195 |
Q |
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| T |
24361606 |
cggttttgagaaaaaagtcatctaaaccgtgagataaaaaaacatgtggtt |
24361556 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 42544628 - 42544679
Alignment:
| Q |
145 |
cggttttgag-aaaaaagtcattttaaccgtgagataaaaaagcatgcggtt |
195 |
Q |
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| T |
42544628 |
cggttttgagcaaaaaagtcatctaaaccgcgagataaaaaagcatgcggtt |
42544679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 9160950 - 9160999
Alignment:
| Q |
145 |
cggttttgagaaaaaagtcattttaaccgtgagataaaaaagcatgcggtt |
195 |
Q |
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| T |
9160950 |
cggttttgagaaaaaagtcattcaaaccgcgagat-aaaaagcatgcggtt |
9160999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 41325079 - 41325132
Alignment:
| Q |
158 |
aaagtcattttaaccgtgagataaaaaagcatgcggttcgacttaattcggttg |
211 |
Q |
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| T |
41325079 |
aaagtcatttgaaccgcgagataaataagtatgcggtttgatttaattcggttg |
41325132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 29389013 - 29389053
Alignment:
| Q |
155 |
aaaaaagtcattttaaccgtgagataaaaaagcatgcggtt |
195 |
Q |
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| T |
29389013 |
aaaaaagtcatccaaaccgtgagataaaaaagcatgcggtt |
29389053 |
T |
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