View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_low_31 (Length: 240)
Name: NF8499_low_31
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 50373339 - 50373535
Alignment:
| Q |
16 |
ggagttaaagaggattccaaacgaacagttcagagatataaagtccctatagaatccacaaaaaataaatgactaatttgagctggagcttggaaccact |
115 |
Q |
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| T |
50373339 |
ggagttaaagaggattccaaacgaacagttcagagatataaagtccctatagaatccacaaaaaataaatgactaatttgagctggagcttggaaccact |
50373438 |
T |
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| Q |
116 |
actatatcccaaagctgcttaagcatgtgcatgtgcatgtgcacaggagttagcttcacaatatgtgcgacatattttcacttcccaatctagctccaac |
215 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50373439 |
actatatcccaaagctgcttaa------------gcatgtgcacaggagttagcttcacaatatgtgcgacatattttcacttcccaatctagctccaac |
50373526 |
T |
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