View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_low_32 (Length: 240)
Name: NF8499_low_32
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_low_32 |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 24896679 - 24896457
Alignment:
| Q |
18 |
gatatcgtatgacatgctcgggtatgtacaagataagtcactgatacaacgcaatactgcaagatacaactttagtgggctgggataaaagcgcacaact |
117 |
Q |
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| T |
24896679 |
gatatcgtatgacatgctcgggtatgtataagataagtcactgatacaacacaatactgcaagatacaactttagtgggcggggataaaaacgcacaact |
24896580 |
T |
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| Q |
118 |
tgattgttctctttaactctctattggtctattatttgtcaaaaatttctacaacagttctgtcctgtgctaccatggtctgctagttgattgtctagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24896579 |
tgattgttctctttaactctctattggtctattatttgtcaaaaatttctacaacagttctgtcctgtgctaccatgttctgctagttgattgtctagaa |
24896480 |
T |
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| Q |
218 |
ttttataagtttatctaaaattt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
24896479 |
ttttataagtttatctaaaattt |
24896457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 24908816 - 24908778
Alignment:
| Q |
45 |
acaagataagtcactgatacaacgcaatactgcaagata |
83 |
Q |
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| T |
24908816 |
acaagatatgtcactgatacaacgcaatactgcaggata |
24908778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 24986319 - 24986281
Alignment:
| Q |
45 |
acaagataagtcactgatacaacgcaatactgcaagata |
83 |
Q |
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| T |
24986319 |
acaagatatgtcactgatacaacgcaatactgcaggata |
24986281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 22400 - 22362
Alignment:
| Q |
45 |
acaagataagtcactgatacaacgcaatactgcaagata |
83 |
Q |
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|||||||| ||||||||||||||||||||||||| |||| |
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| T |
22400 |
acaagatatgtcactgatacaacgcaatactgcaggata |
22362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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