View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_low_33 (Length: 235)
Name: NF8499_low_33
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 42470678 - 42470524
Alignment:
| Q |
64 |
gcatacctcggtccacatttccctaacattttcaagaaccatattgcagtgcctatcgaaagccatgacacgacctagaagctttttgttgttccgacaa |
163 |
Q |
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| T |
42470678 |
gcatacctcggtccacatttccctaacattttcaagaaccatattgcagtgcctatcgaaagccatgacacgacctagaagctttttgttgttccgacaa |
42470579 |
T |
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| Q |
164 |
tttatcagtacctgcacaaatgttttgaaccctacataagaacctacacttcaat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42470578 |
tttatcagtacctgcacaaatgttttgaaccctacataagaacctacacttcaat |
42470524 |
T |
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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 44692559 - 44692674
Alignment:
| Q |
64 |
gcatacctcggtccacatttccctaacattttcaagaaccatattgcagtgcctatcgaaagccatgacacgacctagaagctttttgttgttccgacaa |
163 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
44692559 |
gcatacctcagtccacatttcccggacattttcaagaaccatattgcagtgtctatcaaaagccctgacacggcctagaagctttttgttgttacgacaa |
44692658 |
T |
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| Q |
164 |
tttatcagtacctgca |
179 |
Q |
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| T |
44692659 |
ttgatcagaacctgca |
44692674 |
T |
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