View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8499_low_4 (Length: 462)

Name: NF8499_low_4
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8499_low_4
NF8499_low_4
[»] chr6 (1 HSPs)
chr6 (50-446)||(31100319-31100715)
[»] chr5 (3 HSPs)
chr5 (50-446)||(7818999-7819395)
chr5 (50-161)||(19358050-19358161)
chr5 (176-206)||(31468844-31468874)
[»] chr2 (1 HSPs)
chr2 (50-438)||(31997638-31998026)
[»] chr1 (2 HSPs)
chr1 (50-438)||(7445806-7446184)
chr1 (50-408)||(35601101-35601451)
[»] chr8 (1 HSPs)
chr8 (50-98)||(3138310-3138358)
[»] chr3 (5 HSPs)
chr3 (168-206)||(15462629-15462667)
chr3 (163-243)||(11752083-11752163)
chr3 (173-206)||(21789261-21789294)
chr3 (173-206)||(39464268-39464301)
chr3 (134-218)||(36834135-36834219)
[»] chr7 (1 HSPs)
chr7 (194-261)||(22902022-22902089)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 50 - 446
Target Start/End: Original strand, 31100319 - 31100715
Alignment:
Q  50 taagctctagggaagaaagttcccatggcgtcgcttctaatcaaagggagtaagtcgatcggaggtgtagcatgaacagatagatcttcattggagttgg 149  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||||||    
T  31100319 taagctctagggaagaaagttctcatggcgtcgcttctaatcaaagggagtaagtcggtcggaggagtagcatgaatagaaagatcttcattggagttgg 31100418  T
Q  150 ccccaagcttcgtcatgaagtcggcgcattgatttccttcacggagacaatgatgaatgttgaagtttcttgcagacaagagatctttaatatcatggat 249  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||| |||||||||||    
T  31100419 ccccatgcttcgccatgaagtcggcgcattgatttccttcacggaggcaatgatgaatgttgaagtttcttgaggacaagagatcttttatatcatggat 31100518  T
Q  250 taaaaccgcataaacatggtaacttggaacatgacctgtgatgagtcttatggagagcggagaatctgtgtagcacaccaaatcttcgaatcccattgct 349  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||  ||||||||||||||||| |  ||||||||     
T  31100519 taaaaccgcataaacatggtaacttggaacatgaccaatgatgagtcttatggagagcagagaatctgaatagcacaccaaatcttctatgcccattgcc 31100618  T
Q  350 actgcaagacgtagaccttgttgaattgcggtgagttcggcgaacaagatgtcagttgagatagggatgaatccagagaaacccgagaggtagtaac 446  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||  |||| ||||||||||||||||    
T  31100619 actgctagacgtagaccttgttgaattgcggtgagctcggcaaacaagatgtcagttgatatagggatgaatccgaagaatcccgagaggtagtaac 31100715  T

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Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 50 - 446
Target Start/End: Complemental strand, 7819395 - 7818999
Alignment:
Q  50 taagctctagggaagaaagttcccatggcgtcgcttctaatcaaagggagtaagtcgatcggaggtgtagcatgaacagatagatcttcattggagttgg 149  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||||||| |||| ||||||| ||||||||||  || |||||||||||||||||||    
T  7819395 taagctctagggaagaaggttcccagggcgtcacttctaatcaaagggagtaggtcggtcggaggagtagcatgaatggaaagatcttcattggagttgg 7819296  T
Q  150 ccccaagcttcgtcatgaagtcggcgcattgatttccttcacggagacaatgatgaatgttgaagtttcttgcagacaagagatctttaatatcatggat 249  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||| |||||||||||    
T  7819295 ccccaagcttcgccatgaagtcggcgcattgatttccttcacggaggcaatgatgaatgttgaagtttcttgaggacaagagatcttttatatcatggat 7819196  T
Q  250 taaaaccgcataaacatggtaacttggaacatgacctgtgatgagtcttatggagagcggagaatctgtgtagcacaccaaatcttcgaatcccattgct 349  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||  ||||||||||||||||| |  | ||||||     
T  7819195 taaaaccgcataaacatggtaacttggaacatgaccagtgatgagtgttatggagagcagagaatctgaatagcacaccaaatcttctatgctcattgcc 7819096  T
Q  350 actgcaagacgtagaccttgttgaattgcggtgagttcggcgaacaagatgtcagttgagatagggatgaatccagagaaacccgagaggtagtaac 446  Q
    || || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||  ||||| ||||||||||||||||    
T  7819095 acagctagacgtagaccttgttgaattgcggtgagctcggcaaacaagatgtcagttgatatagggatgaatctggagaatcccgagaggtagtaac 7818999  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 19358050 - 19358161
Alignment:
Q  50 taagctctagggaagaaagttcccatggcgtcgcttctaatcaaagggagtaagtcgatcggaggtgtagcatgaacagatagatcttcattggagttgg 149  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||  |||||||||| ||| |||||||||||| ||||||    
T  19358050 taagctctagggaagaaggttcccatggcgtcgcttctaatcaaagggaggaggtcggtcggagcagtagcatgaatagaaagatcttcattgaagttgg 19358149  T
Q  150 ccccaagcttcg 161  Q
    ||||||||||||    
T  19358150 ccccaagcttcg 19358161  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 31468874 - 31468844
Alignment:
Q  176 cattgatttccttcacggagacaatgatgaa 206  Q
    |||||||||||||||||||||||||||||||    
T  31468874 cattgatttccttcacggagacaatgatgaa 31468844  T

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Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 50 - 438
Target Start/End: Complemental strand, 31998026 - 31997638
Alignment:
Q  50 taagctctagggaagaaagttcccatggcgtcgcttctaatcaaagggagtaagtcgatcggaggtgtagcatgaacagatagatcttcattggagttgg 149  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||| | |||| ||||||| |||||||||| ||| |||||||||||||||||||    
T  31998026 taagctctagggaagaaggtttccatggcgtcgcttctaatcaaagggaggaggtcggtcggaggagtagcatgaatagaaagatcttcattggagttgg 31997927  T
Q  150 ccccaagcttcgtcatgaagtcggcgcattgatttccttcacggagacaatgatgaatgttgaagtttcttgcagacaagagatctttaatatcatggat 249  Q
    ||| | |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||| |||||||||||    
T  31997926 ccctaggcttcgccatgaagtcggcgcattgatttccttcacggaggcaatgatgaatgttgaagtttcttgaggacaagagatcttttatatcatggat 31997827  T
Q  250 taaaaccgcataaacatggtaacttggaacatgacctgtgatgagtcttatggagagcggagaatctgtgtagcacaccaaatcttcgaatcccattgct 349  Q
    ||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||  ||||||||||||||||| |  ||||||||     
T  31997826 taacaccgcataaacatggtaacttggaacatgaccagtgaggagtcttatggagagcagagaatctgaatagcacaccaaatcttctatgcccattgcc 31997727  T
Q  350 actgcaagacgtagaccttgttgaattgcggtgagttcggcgaacaagatgtcagttgagatagggatgaatccagagaaacccgagag 438  Q
    || || ||||| |||||||||||| |||||||||| ||||  ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  31997726 acagctagacgaagaccttgttgatttgcggtgagctcggaaaacaagatgtcagttgatatagggatgaatccagagaatcccgagag 31997638  T

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Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 50 - 438
Target Start/End: Original strand, 7445806 - 7446184
Alignment:
Q  50 taagctctagggaagaaagttcccatggcgtcgcttctaatcaaagggagtaagtcgatcggaggtgtagcatgaacagatagatcttcattggagttgg 149  Q
    |||||||| |||||| | ||||||||||||||| ||||||||||||| || | |||| ||||||| |||||||||| ||| ||||||||||||  |||||    
T  7445806 taagctcttgggaaggaggttcccatggcgtcgtttctaatcaaaggaagaaggtcgctcggaggagtagcatgaaaagaaagatcttcattgttgttgg 7445905  T
Q  150 ccccaagcttcgtcatgaagtcggcgcattgatttccttcacggagacaatgatgaatgttgaagtttcttgcagacaagagatctttaatatcatggat 249  Q
    |||||||||||| |||||| |||||||| |||||||||||||||||          ||| |||| ||||| |  |||||||| ||| | || || |||||    
T  7445906 ccccaagcttcgccatgaaatcggcgcactgatttccttcacggag----------atggtgaaatttctcgtcgacaagaggtctcttatttcttggat 7445995  T
Q  250 taaaaccgcataaacatggtaacttggaacatgacctgtgatgagtcttatggagagcggagaatctgtgtagcacaccaaatcttcgaatcccattgct 349  Q
    |||||   ||||  ||||| |  | | |||||| ||  ||| ||| | |||||||||| | || |||| |||||||||||  ||||| | |||||||||     
T  7445996 taaaataacatatgcatggaatttcgaaacatggccaatgaggagccctatggagagcagcgagtctgagtagcacaccatttcttctattcccattgcc 7446095  T
Q  350 actgcaagacgtagaccttgttgaattgcggtgagttcggcgaacaagatgtcagttgagatagggatgaatccagagaaacccgagag 438  Q
    || || | ||||| |||  |||||||||||||||| ||||| |||| |||||||||||| |||||||||||||  ||||| ||||||||    
T  7446096 accgctaaacgtaaaccccgttgaattgcggtgagctcggctaacaggatgtcagttgaaatagggatgaatctggagaatcccgagag 7446184  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 50 - 408
Target Start/End: Complemental strand, 35601451 - 35601101
Alignment:
Q  50 taagctctagggaagaaagttcccatggcgtcgcttctaatcaaagggagtaagtcgatcggaggtgtagcatgaacagatagatcttcattggagttgg 149  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||||||| |||||||||  ||        | |||||||||||    
T  35601451 taagctctagggaagaaagttcccattgcgtcgcttctaatcaaagggaggagatcgatcggaggagtagcatgagaag--------tgattggagttgg 35601360  T
Q  150 ccccaagcttcgtcatgaagtcggcgcattgatttccttcacggagacaatgatgaatgttgaagtttcttgcagacaagagatctttaatatcatggat 249  Q
    |||||| ||| | |||| |||| |  ||||||||||||||||||||||||||||||||| ||||| ||||||  |||||||| ||||| || || || ||    
T  35601359 ccccaatctttgccatgtagtcagtacattgatttccttcacggagacaatgatgaatggtgaagcttcttgaggacaagaggtcttttatgtcttgtat 35601260  T
Q  250 taaaaccgcataaacatggtaacttggaacatgacctgtgatgagtcttatggagagcggagaatctgtgtagcacaccaaatcttcgaatcccattgct 349  Q
    |||||| ||||| |||||   | | |   ||||||| || ||||| ||||| |||||| | || |||| |||||||||||| ||||| | ||||| | |     
T  35601259 taaaactgcatatacatgaagattagaggcatgaccagtaatgaggcttatagagagcagggagtctgagtagcacaccaattcttctattcccaattcc 35601160  T
Q  350 actgcaagacgtagaccttgttgaattgcggtgagttcggcgaacaagatgtcagttga 408  Q
    || || | | | |||||  | |||||||||||||| ||||| ||||| || ||||||||    
T  35601159 acagctaaaagaagaccacggtgaattgcggtgagctcggcaaacaaaatatcagttga 35601101  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 3138358 - 3138310
Alignment:
Q  50 taagctctagggaagaaagttcccatggcgtcgcttctaatcaaaggga 98  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  3138358 taagctctagggaagaaggttcccatggcgtcgcttctgatcaaaggga 3138310  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 15462629 - 15462667
Alignment:
Q  168 agtcggcgcattgatttccttcacggagacaatgatgaa 206  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  15462629 agtccgcgcattgatttccttcacggagacaatgatgaa 15462667  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 11752163 - 11752083
Alignment:
Q  163 catgaagtcggcgcattgatttccttcacggagacaatgatgaatgttgaagtttcttgcagacaagagatctttaatatc 243  Q
    ||||||||| || |||||||||||||| |   |||||||||||||   ||| |||||||  ||||||||||||||||||||    
T  11752163 catgaagtcagcacattgatttccttctctcggacaatgatgaatcgagaaatttcttgtggacaagagatctttaatatc 11752083  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 21789294 - 21789261
Alignment:
Q  173 gcgcattgatttccttcacggagacaatgatgaa 206  Q
    |||||||| |||||||||||||||||||||||||    
T  21789294 gcgcattggtttccttcacggagacaatgatgaa 21789261  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 39464301 - 39464268
Alignment:
Q  173 gcgcattgatttccttcacggagacaatgatgaa 206  Q
    |||||||| |||||||||||||||||||||||||    
T  39464301 gcgcattggtttccttcacggagacaatgatgaa 39464268  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 36834135 - 36834219
Alignment:
Q  134 tcttcattggagttggccccaagcttcgtcatgaagtcggcgcattgatttccttcacggagacaatgatgaatgttgaagtttc 218  Q
    |||||||| ||| |||| |||||||| | || |||||| || |||||||| ||||| | ||| ||||||||||||  ||||||||    
T  36834135 tcttcattcgaggtggctccaagcttagccaagaagtctgcacattgattcccttctccgaggcaatgatgaatggagaagtttc 36834219  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 22902022 - 22902089
Alignment:
Q  194 agacaatgatgaatgttgaagtttcttgcagacaagagatctttaatatcatggattaaaaccgcata 261  Q
    ||||||||||||| | |||| || |||| ||||||||||||||| ||||| || |||||||| |||||    
T  22902022 agacaatgatgaacggtgaaattccttgaagacaagagatctttgatatcttgaattaaaacagcata 22902089  T

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