View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8499_low_40 (Length: 203)

Name: NF8499_low_40
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8499_low_40
NF8499_low_40
[»] chr2 (3 HSPs)
chr2 (13-187)||(7531073-7531247)
chr2 (61-99)||(14464996-14465034)
chr2 (96-179)||(7523508-7523587)
[»] chr8 (2 HSPs)
chr8 (13-60)||(9759318-9759365)
chr8 (61-99)||(15005989-15006027)
[»] chr4 (6 HSPs)
chr4 (13-60)||(22378118-22378165)
chr4 (13-56)||(5862763-5862806)
chr4 (13-60)||(12411039-12411086)
chr4 (13-60)||(22377787-22377834)
chr4 (13-60)||(12421502-12421549)
chr4 (15-51)||(12332655-12332691)
[»] scaffold0002 (1 HSPs)
scaffold0002 (61-99)||(187917-187955)
[»] chr3 (1 HSPs)
chr3 (61-99)||(13224484-13224522)
[»] chr7 (2 HSPs)
chr7 (61-99)||(17933960-17933998)
chr7 (61-95)||(38818858-38818892)
[»] chr6 (1 HSPs)
chr6 (13-60)||(13735671-13735718)
[»] scaffold0518 (1 HSPs)
scaffold0518 (22-54)||(1937-1969)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 7531247 - 7531073
Alignment:
Q  13 attattctgtaaaggagctgaatgaaacaaaagtttcacgttcggtttccgtaaacgatggatactaggtggctgtgcgtatcgacctgctacaagcctg 112  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7531247 attattctgtaaaggagctgaatgaaacaaaagttttacgttcggtttctgtaaacgatggatactaggtggctgtgcgtatcgacctgctacaagcctg 7531148  T
Q  113 caacaactgccacttaatttttctatgaaatatgatagctacgttagagcaatatacattgcaaacaagcaaaat 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7531147 caacaactgccacttaatttttctatgaaatatgatagctacgttagagcaatatacattgcaaacaagcaaaat 7531073  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 14465034 - 14464996
Alignment:
Q  61 ccgtaaacgatggatactaggtggctgtgcgtatcgacc 99  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  14465034 ccgtaaacgatggatactaggtggttgtgcgtatcgacc 14464996  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 7523508 - 7523587
Alignment:
Q  96 gacctgctacaagcctgcaacaactgccacttaatttttctatgaaatatgatagctacgttagagcaatatacattgcaaaca 179  Q
    ||||| |||||||||| ||||||||||    |||||||||||||||| |||| | |||| ||||| || |||||||| ||||||    
T  7523508 gaccttctacaagcctacaacaactgc----taatttttctatgaaagatgacaactactttagaccattatacattacaaaca 7523587  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 9759365 - 9759318
Alignment:
Q  13 attattctgtaaaggagctgaatgaaacaaaagtttcacgttcggttt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9759365 attattctgtaaaggagctgaatgaaacaaaagtttcacgttcagttt 9759318  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 15006027 - 15005989
Alignment:
Q  61 ccgtaaacgatggatactaggtggctgtgcgtatcgacc 99  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  15006027 ccgtaaacgatggatactaggcggctgtgtgtatcgacc 15005989  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 22378165 - 22378118
Alignment:
Q  13 attattctgtaaaggagctgaatgaaacaaaagtttcacgttcggttt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22378165 attattctgtaaaggagctgaatgaaacaaaagtttcacgttcagttt 22378118  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 5862806 - 5862763
Alignment:
Q  13 attattctgtaaaggagctgaatgaaacaaaagtttcacgttcg 56  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  5862806 attattatgtaaaggagctgaatgaaacaaaagtttcacgttcg 5862763  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 12411086 - 12411039
Alignment:
Q  13 attattctgtaaaggagctgaatgaaacaaaagtttcacgttcggttt 60  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  12411086 attactctataaaggagttgaatgaaacaaaagtttcacgttcggttt 12411039  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 22377834 - 22377787
Alignment:
Q  13 attattctgtaaaggagctgaatgaaacaaaagtttcacgttcggttt 60  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  22377834 attattctgtaaaggagctgactgaaacaaatgtttcatgttcggttt 22377787  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 12421502 - 12421549
Alignment:
Q  13 attattctgtaaaggagctgaatgaaacaaaagtttcacgttcggttt 60  Q
    |||| ||| |||||||||||||||||||||||||||||| || |||||    
T  12421502 attactctataaaggagctgaatgaaacaaaagtttcacatttggttt 12421549  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 12332655 - 12332691
Alignment:
Q  15 tattctgtaaaggagctgaatgaaacaaaagtttcac 51  Q
    |||| |||||||||||| |||||||||||||||||||    
T  12332655 tattatgtaaaggagcttaatgaaacaaaagtttcac 12332691  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 187955 - 187917
Alignment:
Q  61 ccgtaaacgatggatactaggtggctgtgcgtatcgacc 99  Q
    |||||||||||||||||||||||||||||||||||||||    
T  187955 ccgtaaacgatggatactaggtggctgtgcgtatcgacc 187917  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 13224522 - 13224484
Alignment:
Q  61 ccgtaaacgatggatactaggtggctgtgcgtatcgacc 99  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13224522 ccgtaaacgatggatactaggtggctgtgcgtatcgacc 13224484  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 17933960 - 17933998
Alignment:
Q  61 ccgtaaacgatggatactaggtggctgtgcgtatcgacc 99  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  17933960 ccgtaaacgatggatactaggcggctgtgcgtatcgacc 17933998  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 95
Target Start/End: Complemental strand, 38818892 - 38818858
Alignment:
Q  61 ccgtaaacgatggatactaggtggctgtgcgtatc 95  Q
    ||||||||||||||||||||| |||||||||||||    
T  38818892 ccgtaaacgatggatactaggcggctgtgcgtatc 38818858  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 13735671 - 13735718
Alignment:
Q  13 attattctgtaaaggagctgaatgaaacaaaagtttcacgttcggttt 60  Q
    |||| ||| ||||||| |||||||||||||| ||||||||||||||||    
T  13735671 attactctataaaggatctgaatgaaacaaatgtttcacgttcggttt 13735718  T

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Target: scaffold0518 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 1969 - 1937
Alignment:
Q  22 taaaggagctgaatgaaacaaaagtttcacgtt 54  Q
    |||||||||||||||||| ||||||||||||||    
T  1969 taaaggagctgaatgaaataaaagtttcacgtt 1937  T

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