View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8499_low_5 (Length: 428)
Name: NF8499_low_5
Description: NF8499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8499_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 45196685 - 45197083
Alignment:
| Q |
14 |
agagaccaaaaaataattaacaatattcaattatttcaaactttagattaccaacaaaaagaatactcaccagctgtgctatgagaaaggcaaccataag |
113 |
Q |
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| T |
45196685 |
agagacgaaaaaataattaacaatattcaattatttcaaactttagattaccaacaaaaagaatactcaccagctgtgctatgagaaaggcaaccataag |
45196784 |
T |
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| Q |
114 |
aaggatgccaggacgttcgacgaaagaccagctccttgagcgtgtaacaaagatgagagcttgacttacagtactcacttgaaggtaaacagcagctgtg |
213 |
Q |
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| T |
45196785 |
aaggatgcctggacgttcgacgaaagaccagctccttgagcgtgtaacaaagatgagagcttgacttacagtactcacttgaaggtaaacagcagctgtg |
45196884 |
T |
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| Q |
214 |
agttcttcgtggttctccctgatagaatgcactccaaatttttcctgcaaatagtttttcactttatagattaagcatgaaggctgaaaataatgaaatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45196885 |
agttcttcgtggttctccctgatagaatgcactccaaatttttcctgcaaatagtttttcactttatagattaagcatgaaggctgaaaataatgaaatg |
45196984 |
T |
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| Q |
314 |
ataattttacaacattttggaaaatcatataaaatctgacagtcttaccgtgaaaaaatcagatgcatgagcagcccaaaagaagacaacagtcataac |
412 |
Q |
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| T |
45196985 |
ataattttacaacattttggaaaatcatataaaatctgacagtcttaccgtgaaaaaatcagatgcatgagcagcccaaaagaagacaacagtcataac |
45197083 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 48436184 - 48436264
Alignment:
| Q |
120 |
gccaggacgttcgacgaaagaccagctccttgagcgtgtaacaaagatgagagcttgacttacagtactcacttgaaggta |
200 |
Q |
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| T |
48436184 |
gccaggacgttcgacataagaccaactccttgaccttgtcacaaagatgagtgcttgactaataatgctcacttgaaggta |
48436264 |
T |
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